C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin VA (heavy chain 12, myoxin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399231 MYO5A-001 ENSG00000197535 9606 - 15:52307283-52529050 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverOvaryPlacentaENST00000399231
Transcript ID Breast Colon Heart Kidney Liver Ovary Placenta
ENST00000399231 0.387±0.00 0.639±0.00 0.124±0.00 0.434±0.00 1.847±0.00 0.361±0.00 0.587±0.46

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000146 NAS microfilament motor activity
GO:0001726 IDA ruffle
GO:0001750 IEA photoreceptor outer segment
GO:0003774 IEA motor activity
GO:0003779 IEA actin binding
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005764 IDA lysosome
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0005777 IDA peroxisome
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005829 IDA cytosol
GO:0005882 IEA intermediate filament
GO:0005884 IDA actin filament
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006582 IEA melanin metabolic process
GO:0006810 NAS transport
GO:0006887 IEA exocytosis
GO:0006892 IMP post-Golgi vesicle-mediated transport
GO:0007268 IEA synaptic transmission
GO:0007601 IEA visual perception
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016192 ISS vesicle-mediated transport
GO:0016459 IEA myosin complex
GO:0017137 IPI Rab GTPase binding
GO:0030048 NAS actin filament-based movement
GO:0030050 IMP vesicle transport along actin filament
GO:0030073 IEA insulin secretion
GO:0030141 IEA secretory granule
GO:0030318 IEA melanocyte differentiation
GO:0030426 NAS growth cone
GO:0031585 IEA regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0031982 IDA vesicle
GO:0031987 IEA locomotion involved in locomotory behavior
GO:0032252 IEA secretory granule localization
GO:0032400 IEA melanosome localization
GO:0032402 IEA melanosome transport
GO:0032433 IDA filopodium tip
GO:0032593 ISS insulin-responsive compartment
GO:0032869 ISS cellular response to insulin stimulus
GO:0035371 IEA microtubule plus-end
GO:0042438 IEA melanin biosynthetic process
GO:0042470 IEA melanosome
GO:0042476 IEA odontogenesis
GO:0042552 IEA myelination
GO:0042641 IEA actomyosin
GO:0042759 IEA long-chain fatty acid biosynthetic process
GO:0043005 NAS neuron projection
GO:0043025 IEA neuronal cell body
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0048066 IEA developmental pigmentation
GO:0050808 IEA synapse organization
GO:0051643 IEA endoplasmic reticulum localization
GO:0055037 IDA recycling endosome
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:0072659 ISS protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000155282 Myo5a-003 protein_coding Mus_musculus 0 7555
ENSMUST00000123128 Myo5a-001 protein_coding Mus_musculus 0 5313
ENSMUST00000136731 Myo5a-009 protein_coding Mus_musculus 0 5251
ENSMUST00000123531 Myo5a-010 nonsense_mediated_decay Mus_musculus 0 3703
ENSMUST00000136604 Myo5a-002 processed_transcript Mus_musculus 0 2130
ENSMUST00000148144 Myo5a-011 protein_coding Mus_musculus 0 2028
ENSDART00000088037 myo5aa-201 protein_coding Danio_rerio 0 1125
ENSDART00000133618 myo5aa-001 protein_coding Danio_rerio 0 1107
ENSDART00000148541 myo5aa-003 protein_coding Danio_rerio 0 1107
ENSMUST00000149032 Myo5a-012 retained_intron Mus_musculus 0 1029
ENSMUST00000136871 Myo5a-006 retained_intron Mus_musculus 0 922
ENSMUST00000130384 Myo5a-013 protein_coding Mus_musculus 0 872
ENSMUST00000129281 Myo5a-007 protein_coding Mus_musculus 0 822
ENSMUST00000153404 Myo5a-004 retained_intron Mus_musculus 0 660
ENSMUST00000142181 Myo5a-008 retained_intron Mus_musculus 0 652
ENSMUST00000143355 Myo5a-014 retained_intron Mus_musculus 0 217

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