C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pescadillo ribosomal biogenesis factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402284 PES1-004 ENSG00000100029 9606 - 22:30576665-30591880 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000402284
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000402284 15.341±0.00 19.557±0.00 4.074±2.44 7.245±5.51 8.480±7.62 2.893±1.25 8.060±0.00 6.028±0.00 13.888±0.00 9.063±0.00 16.576±2.73

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000463 IEA maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 IEA maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005654 IEA nucleoplasm
GO:0005694 IEA chromosome
GO:0005730 IDA:IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0030687 IEA preribosome, large subunit precursor
GO:0042254 IEA ribosome biogenesis
GO:0043021 IEA ribonucleoprotein complex binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020705 Pes1-201 protein_coding Mus_musculus 0 1110
ENSMUST00000109985 Pes1-001 protein_coding Mus_musculus 0 1110
ENSMUST00000178604 Gm5472-201 processed_pseudogene Mus_musculus 0 706
ENSMUST00000137544 Pes1-002 processed_transcript Mus_musculus 0 580
ENSMUST00000042344 4930556J24Rik-001 protein_coding Mus_musculus 6e-38 163

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