C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein-O-mannosyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402686 POMT1-003 ENSG00000130714 9606 + 9:131502944-131523806 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLiverOvaryPlacentaTestisENST00000402686
Transcript ID Adipose Brain Heart Kidney Liver Ovary Placenta Testis
ENST00000402686 2.456±0.00 2.138±0.00 0.286±0.00 4.684±2.61 2.396±0.00 8.463±2.30 9.196±3.39 32.999±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088E CIL_00088E_0001 VISTA 9:131030990-131632063
CIL_0006ID CIL_0006ID_0001 CGP 9:131394093-131523806
CIL_0006IF CIL_0006IF_0001 CGP 9:131502902-131531268

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000030 IEA:TAS mannosyltransferase activity
GO:0004169 IEA dolichyl-phosphate-mannose-protein mannosyltransferase activity
GO:0005783 TAS endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006493 IEA:TAS protein O-linked glycosylation
GO:0007275 TAS multicellular organismal development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0035269 IEA protein O-linked mannosylation
GO:0046872 IEA metal ion binding
GO:0097502 IEA:TAS mannosylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036473 Pomt1-001 protein_coding Mus_musculus 0 2039
ENSMUST00000129163 Pomt1-003 retained_intron Mus_musculus 0 1411
ENSMUST00000132516 Pomt1-006 nonsense_mediated_decay Mus_musculus 0 636
ENSMUST00000132853 Pomt1-007 retained_intron Mus_musculus 0 440
ENSMUST00000138000 Pomt1-008 retained_intron Mus_musculus 0 422

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