C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermine synthase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404933 SMS-003 ENSG00000102172 9606 + X:21940573-21994835 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000404933
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000404933 9.077±0.00 4.088±0.00 15.209±0.00 14.333±2.03 9.913±2.90 18.080±6.33 7.305±1.19 15.100±8.73 11.986±5.09 18.106±6.07 2.843±1.22 34.074±8.79 64.315±14.56 21.260±4.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004766 TAS spermidine synthase activity
GO:0005829 TAS cytosol
GO:0006555 TAS methionine metabolic process
GO:0006595 TAS polyamine metabolic process
GO:0006597 IEA spermine biosynthetic process
GO:0016768 IEA spermine synthase activity
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112529 Sms-001 protein_coding Mus_musculus 0 2119
ENSMUST00000121773 Gm14680-001 processed_pseudogene Mus_musculus 0 1500
ENSMUST00000120712 Gm6292-001 processed_pseudogene Mus_musculus 0 1341
ENSMUST00000145477 Sms-005 nonsense_mediated_decay Mus_musculus 0 1157
ENSMUST00000127089 Sms-003 retained_intron Mus_musculus 0 1002
ENSMUST00000123770 Sms-002 protein_coding Mus_musculus 0 302
ENSMUST00000146026 Sms-004 retained_intron Mus_musculus 0 296

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