C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: v-rel avian reticuloendotheliosis viral oncogene homolog A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406246 RELA-001 ENSG00000173039 9606 - 11:65653596-65663094 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000406246
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000406246 24.201±0.00 21.238±0.00 2.839±1.94 16.063±0.00 15.190±0.00 5.905±0.00 10.899±0.00 45.646±0.00 27.363±0.00 32.672±19.67 17.263±0.43 12.987±1.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0001 VISTA 11:65187233-65790923

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001889 IEA liver development
GO:0001942 IEA hair follicle development
GO:0002224 TAS toll-like receptor signaling pathway
GO:0002755 TAS MyD88-dependent toll-like receptor signaling pathway
GO:0002756 TAS MyD88-independent toll-like receptor signaling pathway
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0006117 IEA acetaldehyde metabolic process
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006952 IEA defense response
GO:0006954 IDA inflammatory response
GO:0006968 NAS cellular defense response
GO:0007568 IEA aging
GO:0008134 IPI transcription factor binding
GO:0008284 IDA positive regulation of cell proliferation
GO:0009612 IEA response to mechanical stimulus
GO:0009617 IEA response to bacterium
GO:0009887 IEA organ morphogenesis
GO:0010033 IDA response to organic substance
GO:0010035 IEA response to inorganic substance
GO:0010224 IDA response to UV-B
GO:0014040 IEA positive regulation of Schwann cell differentiation
GO:0014070 IEA response to organic cyclic compound
GO:0016032 IEA viral process
GO:0019221 IDA cytokine-mediated signaling pathway
GO:0019899 IEA enzyme binding
GO:0019901 IPI protein kinase binding
GO:0031293 TAS membrane protein intracellular domain proteolysis
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032332 IEA positive regulation of chondrocyte differentiation
GO:0032403 IEA protein complex binding
GO:0032481 TAS positive regulation of type I interferon production
GO:0032495 IEA response to muramyl dipeptide
GO:0032496 IEA response to lipopolysaccharide
GO:0032570 IEA response to progesterone
GO:0032868 IEA response to insulin
GO:0033590 IEA response to cobalamin
GO:0033613 IPI activating transcription factor binding
GO:0034097 IEA response to cytokine
GO:0034134 TAS toll-like receptor 2 signaling pathway
GO:0034138 TAS toll-like receptor 3 signaling pathway
GO:0034142 TAS toll-like receptor 4 signaling pathway
GO:0034146 TAS toll-like receptor 5 signaling pathway
GO:0034162 TAS toll-like receptor 9 signaling pathway
GO:0034166 TAS toll-like receptor 10 signaling pathway
GO:0035666 TAS TRIF-dependent toll-like receptor signaling pathway
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0038123 TAS toll-like receptor TLR1:TLR2 signaling pathway
GO:0038124 TAS toll-like receptor TLR6:TLR2 signaling pathway
GO:0042177 IEA negative regulation of protein catabolic process
GO:0042301 IDA phosphate ion binding
GO:0042493 IEA response to drug
GO:0042542 IEA response to hydrogen peroxide
GO:0042802 IPI identical protein binding
GO:0043066 IDA negative regulation of apoptotic process
GO:0043123 IEP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043200 IEA response to amino acid
GO:0043234 IEA protein complex
GO:0043278 IEA response to morphine
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045084 IEA positive regulation of interleukin-12 biosynthetic process
GO:0045087 TAS innate immune response
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046627 IEA negative regulation of insulin receptor signaling pathway
GO:0047485 IPI protein N-terminus binding
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0050727 ISS regulation of inflammatory response
GO:0050852 TAS T cell receptor signaling pathway
GO:0051059 IPI NF-kappaB binding
GO:0051092 IDA positive regulation of NF-kappaB transcription factor activity
GO:0051591 IEA response to cAMP
GO:0051607 NAS defense response to virus
GO:0070301 IDA cellular response to hydrogen peroxide
GO:0070431 IDA nucleotide-binding oligomerization domain containing 2 signaling pathway
GO:0070491 IPI repressing transcription factor binding
GO:0070555 IGI response to interleukin-1
GO:0071222 IEA cellular response to lipopolysaccharide
GO:0071316 IMP cellular response to nicotine
GO:0071347 IDA cellular response to interleukin-1
GO:0071354 IMP cellular response to interleukin-6
GO:0071356 IDA cellular response to tumor necrosis factor
GO:0071375 IMP cellular response to peptide hormone stimulus
GO:0071532 IEA ankyrin repeat binding
GO:2000630 IMP positive regulation of miRNA metabolic process
GO:2001237 IMP negative regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025867 Rela-001 protein_coding Mus_musculus 0 2076

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