C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protease, serine 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406725 TMPRSS6-001 ENSG00000187045 9606 - 22:37065439-37109409 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverOvaryPlacentaENST00000406725
Transcript ID Adrenal Breast Colon Heart Kidney Liver Ovary Placenta
ENST00000406725 0.064±0.00 0.059±0.02 0.029±0.01 0.012±0.00 0.031±0.00 6.006±5.90 0.100±0.01 0.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00036O CIL_00036O_0001 CGP 22:37051736-37109563
CIL_00036P CIL_00036P_0001 CGP 22:37065436-37175054

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 NAS angiogenesis
GO:0003824 IEA catalytic activity
GO:0004252 IDA:IEA serine-type endopeptidase activity
GO:0005515 IPI:IEA protein binding
GO:0005886 IDA plasma membrane
GO:0006508 IDA:IEA proteolysis
GO:0016021 IDA integral component of membrane
GO:0030198 NAS extracellular matrix organization
GO:0035556 NAS intracellular signal transduction
GO:0042730 IDA fibrinolysis
GO:0055072 IMP iron ion homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017086 Tmprss6-201 protein_coding Mus_musculus 0 2289

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