C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choline kinase beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406938 CHKB-001 ENSG00000100288 9606 - 22:50578949-50582999 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastKidneyLiverLungOvaryPlacentaENST00000406938
Transcript ID Adipose Brain Breast Kidney Liver Lung Ovary Placenta
ENST00000406938 5.205±0.00 0.665±0.00 10.801±0.00 1.221±0.00 3.164±0.00 2.927±2.16 8.696±0.00 9.379±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002HR CIL_0002HR_0001 CGP 22:50568861-50582965

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004103 IDA choline kinase activity
GO:0004305 IDA ethanolamine kinase activity
GO:0005524 IEA ATP binding
GO:0005829 TAS cytosol
GO:0006644 TAS phospholipid metabolic process
GO:0006646 IEA phosphatidylethanolamine biosynthetic process
GO:0006656 TAS phosphatidylcholine biosynthetic process
GO:0006657 IEA CDP-choline pathway
GO:0016310 IEA phosphorylation
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023289 Chkb-001 protein_coding Mus_musculus 0 1288
ENSMUST00000171140 Chkb-004 retained_intron Mus_musculus 0 835
ENSMUST00000170334 Chkb-003 retained_intron Mus_musculus 0 835
ENSMUST00000052315 Chkb-002 retained_intron Mus_musculus 0 830
ENSMUST00000166267 Chkb-007 retained_intron Mus_musculus 0 568
ENSMUST00000171666 Chkb-008 nonsense_mediated_decay Mus_musculus 0 472
ENSMUST00000170460 Chkb-009 protein_coding Mus_musculus 0 267
ENSMUST00000165623 Chkb-005 retained_intron Mus_musculus 0 244
ENSMUST00000115278 Chkb-006 retained_intron Mus_musculus 0 220
ENSMUST00000112664 Chkb-010 processed_transcript Mus_musculus 0 220

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