C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: choline kinase beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100288 CHKB 9606 - 22:50578949-50601455 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000406938 CHKB-001 50578949-50582999 protein_coding
  ENST00000463053 CHKB-010 50580357-50601455 processed_transcript
  ENST00000464225 CHKB-012 50578963-50580253 processed_transcript
  ENST00000465842 CHKB-008 50581607-50582420 retained_intron
  ENST00000468532 CHKB-007 50579450-50582458 retained_intron
  ENST00000471515 CHKB-011 50578963-50580603 processed_transcript
  ENST00000476289 CHKB-006 50580357-50582854 retained_intron
  ENST00000479003 CHKB-004 50578966-50582820 retained_intron
  ENST00000481673 CHKB-003 50578963-50582845 retained_intron
  ENST00000484266 CHKB-005 50578963-50582824 retained_intron
  ENST00000489453 CHKB-009 50579804-50580780 retained_intron
  ENST00000492582 CHKB-002 50578959-50582854 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000406938ENST00000464225ENST00000468532ENST00000476289ENST00000479003ENST00000481673ENST00000484266ENST00000489453ENST00000492582
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000406938 5.205±0.00 N/A 0.665±0.00 10.801±0.00 N/A 1.221±0.00 3.164±0.00 2.927±2.16 8.696±0.00 9.379±0.11 N/A
ENST00000464225 N/A N/A N/A N/A N/A N/A N/A N/A 20.056±0.00 N/A N/A
ENST00000468532 N/A N/A 1.879±1.02 2.532±0.00 0.957±0.00 0.751±0.00 3.031±0.00 N/A 21.692±0.00 12.808±0.00 34.338±0.00
ENST00000476289 N/A N/A N/A N/A 7.328±0.00 N/A N/A N/A N/A N/A N/A
ENST00000479003 N/A N/A 1.639±0.00 N/A N/A N/A 1.466±0.00 7.010±0.00 N/A N/A N/A
ENST00000481673 2.509±0.00 33.456±0.00 1.659±1.18 6.750±5.14 3.182±0.00 N/A 4.169±0.00 0.710±0.00 7.691±6.00 5.535±0.00 N/A
ENST00000484266 N/A N/A N/A N/A N/A N/A N/A N/A 25.267±0.00 15.848±0.00 46.412±0.00
ENST00000489453 N/A N/A N/A N/A N/A N/A N/A N/A 0.745±0.00 N/A N/A
ENST00000492582 N/A N/A 0.483±0.00 N/A 1.219±0.00 7.967±0.00 N/A N/A 15.042±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002HR CIL_0002HR_0001 CGP 22:50568861-50582965

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004103 IDA choline kinase activity
GO:0004305 IDA ethanolamine kinase activity
GO:0005524 IEA ATP binding
GO:0005829 TAS cytosol
GO:0006644 TAS phospholipid metabolic process
GO:0006646 IEA phosphatidylethanolamine biosynthetic process
GO:0006656 TAS phosphatidylcholine biosynthetic process
GO:0006657 IEA CDP-choline pathway
GO:0016310 IEA phosphorylation
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063167 chkb choline kinase beta protein_coding Danio_rerio
ENSMUSG00000022617 Chkb choline kinase beta protein_coding Mus_musculus

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