C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TGFB-induced factor homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407501 TGIF1-006 ENSG00000177426 9606 + 18:3449882-3458349 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000407501
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000407501 8.878±0.00 1.745±0.00 0.347±0.00 6.508±0.00 10.502±0.00 4.016±0.00 9.158±0.00 3.087±0.00 17.907±0.00 4.904±0.00 15.018±2.40 11.583±4.82 5.412±1.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007275 TAS multicellular organismal development
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059775 Tgif1-001 protein_coding Mus_musculus 0 1290
ENSMUST00000166395 Tgif1-002 protein_coding Mus_musculus 0 1258
ENSMUST00000172229 Tgif1-201 protein_coding Mus_musculus 0 1254
ENSMUST00000118283 Tgif1-003 protein_coding Mus_musculus 0 1254
ENSMUST00000186358 Tgif1-011 protein_coding Mus_musculus 0 952
ENSMUST00000127719 Tgif1-004 protein_coding Mus_musculus 0 891
ENSMUST00000135007 Tgif1-009 protein_coding Mus_musculus 0 603
ENSMUST00000156484 Tgif1-008 protein_coding Mus_musculus 0 459

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