C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409186 PCDH20-001 ENSG00000197991 9606 - 13:61409858-61427849 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LungTestisENST00000409186
Transcript ID Lung Testis
ENST00000409186 0.309±0.00 0.047±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KQ CIL_0005KQ_0002 CGP 13:60396457-61415522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061628 Pcdh20-201 protein_coding Mus_musculus 0 3906

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