C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005KQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000025421-ENSDARG00000036424 CGP 7955 11:43846657-44000228
GeneTranscriptPositionBiotype
ENSDARG00000025421 (tdrd3)
tudor domain containing 3 		ENSDART00000028955 (tdrd3-201) 43846657-43896032 protein_coding
ENSDART00000156080 (tdrd3-001) 43846657-43896032 protein_coding
ENSDARG00000036424 (PCDH20)
protocadherin 20 		ENSDART00000052912 (PCDH20-201) 43996481-44000228 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005KQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000083544-ENSG00000280165 CGP 9606 13:60396457-61415522
GeneTranscriptPositionBiotype
ENSG00000083544 (TDRD3)
tudor domain containing 3 		ENST00000196169 (TDRD3-201) 60396457-60573878 protein_coding
ENST00000377881 (TDRD3-003) 60397334-60573872 protein_coding
ENST00000377882 (TDRD3-005) 60434049-60485899 protein_coding
ENST00000377894 (TDRD3-001) 60396988-60573877 protein_coding
ENST00000463109 (TDRD3-004) 60444687-60461040 processed_transcript
ENST00000471710 (TDRD3-006) 60528963-60538086 retained_intron
ENST00000484389 (TDRD3-002) 60396939-60528837 nonsense_mediated_decay
ENST00000535286 (TDRD3-202) 60397293-60573878 protein_coding
ENST00000621840 (TDRD3-203) 60434047-60573870 protein_coding
ENSG00000197991 (PCDH20)
protocadherin 20 		ENST00000409186 (PCDH20-001) 61409858-61427849 protein_coding
ENSG00000227510 (LINC01442)
long intergenic non-protein coding RNA 1442 		ENST00000414201 (LINC01442-001) 60917042-60920319 lincRNA
ENST00000618872 (LINC01442-002) 60917001-60941768 lincRNA
ENSG00000236608 (EIF4A1P6)
eukaryotic translation initiation factor 4A1 pseudogene 6 		ENST00000448133 (EIF4A1P6-001) 60636888-60638097 processed_pseudogene
ENSG00000279657 (RP11-521H3.3)
 ENST00000624954 (RP11-521H3.3-001) 60730176-60733600 TEC
ENSG00000280165 (PCDH20)
protocadherin 20 		ENST00000409204 (PCDH20-001) 61409685-61415522 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0005KQ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022019-ENSMUSG00000050505 CGP 10090 14:87416639-88471396
GeneTranscriptPositionBiotype
ENSMUSG00000050505 (Pcdh20)
protocadherin 20 		ENSMUST00000061628 (Pcdh20-201) 88464747-88471396 protein_coding
ENSMUSG00000062611 (Rps3a2)
ribosomal protein S3A2 		ENSMUST00000074245 (Rps3a2-001) 88123017-88123808 processed_pseudogene
ENSMUSG00000098095 (Gm9274)
predicted gene 9274 		ENSMUST00000182505 (Gm9274-001) 88349372-88350355 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005KQ_0001ENSDARG00000025421ENSDART00000028955ENSDART00000156080ENSDARG00000036424ENSDART00000052912CIL_0005KQ_0002ENSG00000083544ENST00000196169ENST00000377881ENST00000377882ENST00000377894ENST00000463109ENST00000471710ENST00000484389ENST00000535286ENST00000621840ENSG00000197991ENST00000409186ENSG00000227510ENST00000414201ENST00000618872ENSG00000236608ENST00000448133ENSG00000279657ENST00000624954ENSG00000280165ENST00000409204CIL_0005KQ_0003ENSMUSG00000050505ENSMUST00000061628ENSMUSG00000062611ENSMUST00000074245ENSMUSG00000098095ENSMUST00000182505
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005KQ_0001ENSDARG00000025421ENSDART00000028955ENSDART00000156080ENSDARG00000036424ENSDART00000052912CIL_0005KQ_0002ENSG00000083544ENST00000196169ENST00000377881ENST00000377882ENST00000377894ENST00000471710ENST00000535286ENST00000621840ENSG00000197991ENST00000409186ENSG00000227510ENST00000414201ENST00000618872ENSG00000236608ENST00000448133ENSG00000279657ENST00000624954ENSG00000280165ENST00000409204CIL_0005KQ_0003ENSMUSG00000050505ENSMUST00000061628ENSMUSG00000062611ENSMUST00000074245ENSMUSG00000098095ENSMUST00000182505
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000025421 ENSDART00000028955 N/A N/A N/A 2.227±1.42 N/A N/A 1.856±0.71 N/A 0.708±0.00 N/A 2.518±0.00 N/A N/A N/A
ENSDART00000156080 N/A N/A N/A 2.077±1.11 N/A N/A 2.647±0.00 4.446±0.00 0.152±0.00 N/A 0.746±0.00 N/A N/A N/A
ENSDARG00000036424 ENSDART00000052912 N/A N/A N/A 0.987±0.85 N/A N/A 0.444±0.03 0.495±0.00 N/A N/A 0.205±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000083544 ENST00000196169 0.707±0.00 N/A 0.280±0.00 0.673±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.450±0.00 1.291±0.10
ENST00000377881 N/A 2.046±0.00 N/A 1.402±0.68 2.180±0.00 2.788±0.00 2.458±0.06 N/A N/A 1.581±0.33 0.889±0.00 1.812±1.14 1.113±0.00 3.768±0.00
ENST00000377882 N/A N/A 1.439±0.00 3.524±0.00 3.778±0.00 N/A 6.920±0.00 4.950±0.00 7.962±0.00 6.700±0.00 3.043±0.00 N/A N/A N/A
ENST00000377894 N/A N/A N/A N/A N/A N/A N/A 1.844±1.42 0.434±0.00 N/A N/A 1.758±0.61 0.861±0.48 4.714±0.00
ENST00000463109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471710 0.512±0.00 0.731±0.00 N/A 0.844±0.02 0.919±0.37 1.142±0.00 1.085±0.00 0.475±0.00 0.646±0.38 0.652±0.35 0.978±0.00 0.849±0.31 0.235±0.05 N/A
ENST00000484389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535286 1.318±0.00 N/A N/A N/A 1.226±0.00 3.461±0.00 N/A N/A N/A N/A N/A 1.462±0.00 N/A N/A
ENST00000621840 N/A N/A 0.257±0.00 N/A N/A 1.691±0.00 N/A 2.418±0.00 N/A 1.195±0.00 1.928±1.51 2.149±0.02 0.772±0.00 1.673±0.00
ENSG00000197991 ENST00000409186 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.309±0.00 N/A N/A N/A 0.047±0.01
ENSG00000227510 ENST00000414201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00
ENST00000618872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.108±0.00
ENSG00000236608 ENST00000448133 0.033±0.00 N/A N/A N/A 0.024±0.00 0.011±0.00 N/A 0.012±0.00 N/A 0.011±0.00 0.010±0.00 N/A N/A 0.022±0.00
ENSG00000279657 ENST00000624954 N/A 0.005±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A 0.012±0.01
ENSG00000280165 ENST00000409204 0.081±0.00 0.396±0.00 0.128±0.00 1.911±0.46 0.810±0.73 1.225±0.12 0.402±0.11 0.823±0.25 0.716±0.06 0.607±0.35 0.115±0.11 0.103±0.10 1.559±0.27 0.317±0.17
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000050505 ENSMUST00000061628 0.030±0.02 0.058±0.05 0.049±0.02 1.166±1.50 0.756±0.19 0.372±0.05 0.055±0.04 0.020±0.01 0.030±0.01 0.105±0.05 0.049±0.03 0.051±0.04 0.014±0.00 0.018±0.02
ENSMUSG00000062611 ENSMUST00000074245 4.784±1.40 0.225±0.00 17.620±15.85 8.210±7.60 3.457±1.97 0.595±0.36 1.372±0.41 1.160±0.55 16.848±28.50 1.233±0.32 0.998±0.50 3.205±2.45 0.265±0.20 0.544±0.12
ENSMUSG00000098095 ENSMUST00000182505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.01

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