C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061628 Pcdh20-201 ENSMUSG00000050505 10090 - 14:88464747-88471396 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061628
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061628 0.030±0.02 0.058±0.05 0.049±0.02 1.166±1.50 0.756±0.19 0.372±0.05 0.055±0.04 0.020±0.01 0.030±0.01 0.105±0.05 0.049±0.03 0.051±0.04 0.014±0.00 0.018±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KQ CIL_0005KQ_0003 CGP 14:87416639-88471396

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000409186 PCDH20-001 protein_coding Homo_sapiens 0 3906
ENST00000409204 PCDH20-001 protein_coding Homo_sapiens 0 4048

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