C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GRB10 interacting GYF protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409196 GIGYF2-003 ENSG00000204120 9606 + 2:232697338-232858627 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000409196
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000409196 2.171±0.00 2.877±0.00 6.652±0.00 3.600±0.00 2.992±0.00 3.154±0.00 4.801±1.80 2.059±0.00 1.637±0.00 3.645±1.07 2.726±0.34 12.327±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HW CIL_0003HW_0001 CGP 2:232606057-232858627
CIL_0003HP CIL_0003HP_0001 CGP 2:232697299-232858627

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008219 IEA cell death
GO:0016020 IDA membrane
GO:0017148 IMP negative regulation of translation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172794 Gigyf2-002 protein_coding Mus_musculus 0 4723
ENSMUST00000027475 Gigyf2-001 protein_coding Mus_musculus 0 4639
ENSMUST00000174501 Gigyf2-014 protein_coding Mus_musculus 0 4593
ENSMUST00000172964 Gigyf2-006 nonsense_mediated_decay Mus_musculus 0 4050
ENSMUST00000173173 Gigyf2-009 protein_coding Mus_musculus 0 3398
ENSMUST00000173235 Gigyf2-013 nonsense_mediated_decay Mus_musculus 0 2769
ENSMUST00000164992 Gigyf2-005 protein_coding Mus_musculus 0 2230
ENSMUST00000174671 Gigyf2-007 processed_transcript Mus_musculus 0 1459
ENSMUST00000173850 Gigyf2-010 processed_transcript Mus_musculus 0 821
ENSMUST00000172736 Gigyf2-020 protein_coding Mus_musculus 0 684
ENSMUST00000173636 Gigyf2-019 protein_coding Mus_musculus 0 636
ENSMUST00000173152 Gigyf2-021 protein_coding Mus_musculus 0 532
ENSMUST00000174605 Gigyf2-016 retained_intron Mus_musculus 0 531
ENSMUST00000174535 Gigyf2-003 processed_transcript Mus_musculus 0 496
ENSMUST00000173663 Gigyf2-022 protein_coding Mus_musculus 0 370
ENSMUST00000174482 Gigyf2-017 retained_intron Mus_musculus 0 339
ENSMUST00000172776 Gigyf2-018 retained_intron Mus_musculus 0 270
ENSMUST00000174334 Gigyf2-004 protein_coding Mus_musculus 0 263
ENSMUST00000172976 Gigyf2-015 retained_intron Mus_musculus 0 219

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