C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409204 PCDH20-001 ENSG00000280165 9606 - 13:61409685-61415522 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000409204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000409204 0.081±0.00 0.396±0.00 0.128±0.00 1.911±0.46 0.810±0.73 1.225±0.12 0.402±0.11 0.823±0.25 0.716±0.06 0.607±0.35 0.115±0.11 0.103±0.10 1.559±0.27 0.317±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KQ CIL_0005KQ_0002 CGP 13:60396457-61415522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061628 Pcdh20-201 protein_coding Mus_musculus 0 4048

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