C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box P4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409208 FOXP4-006 ENSG00000137166 9606 + 6:41546573-41599959 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000409208
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000409208 6.073±0.00 3.491±0.00 3.875±0.00 3.804±2.83 2.743±1.53 3.400±0.00 2.631±0.00 0.679±0.00 1.557±1.26 13.315±3.98 1.743±0.60 7.678±4.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F3 CIL_0008F3_0001 VISTA 6:41112821-41713777
CIL_0007QG CIL_0007QG_0001 VISTA 6:41166717-41767957
CIL_0008IB CIL_0008IB_0001 VISTA 6:41169077-41770286
CIL_0008XI CIL_0008XI_0001 VISTA 6:41187113-41790491
CIL_00093V CIL_00093V_0001 VISTA 6:41255486-41855939
CIL_000963 CIL_000963_0001 VISTA 6:41292979-41894337
CIL_00028Z CIL_00028Z_0002 CGP 6:41546426-41654246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113262 Foxp4-003 protein_coding Mus_musculus 0 2682
ENSMUST00000113265 Foxp4-001 protein_coding Mus_musculus 0 2669
ENSMUST00000097311 Foxp4-002 protein_coding Mus_musculus 0 2486
ENSMUST00000113263 Foxp4-008 protein_coding Mus_musculus 0 2453
ENSMUST00000136314 Foxp4-005 processed_transcript Mus_musculus 0 867
ENSDART00000122918 foxp4-202 protein_coding Danio_rerio 0 252
ENSDART00000114288 foxp4-201 protein_coding Danio_rerio 0 252
ENSMUST00000154108 Foxp4-007 retained_intron Mus_musculus 0 239
ENSDART00000121544 foxp1a-201 protein_coding Danio_rerio 6e-25 121
ENSDART00000136509 foxp1a-003 processed_transcript Danio_rerio 6e-25 121
ENSDART00000146526 foxp1a-002 protein_coding Danio_rerio 8e-24 117
ENSDART00000104985 foxp1a-001 protein_coding Danio_rerio 8e-24 117
ENSDART00000129022 foxp1a-004 protein_coding Danio_rerio 8e-24 117

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