C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nibrin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409330 NBN-003 ENSG00000104320 9606 - 8:89933484-89984404 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000409330
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000409330 3.140±0.00 2.931±0.00 1.529±0.00 7.670±0.00 4.549±0.00 2.090±0.70 8.366±0.00 2.576±0.70 4.447±1.12 2.621±0.00 3.828±1.28 2.973±0.00 6.100±0.66

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 IDA DNA damage checkpoint
GO:0000723 IMP telomere maintenance
GO:0000724 TAS double-strand break repair via homologous recombination
GO:0000784 IDA nuclear chromosome, telomeric region
GO:0003684 IC damaged DNA binding
GO:0004003 IMP ATP-dependent DNA helicase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006281 TAS DNA repair
GO:0006302 IDA double-strand break repair
GO:0007050 TAS cell cycle arrest
GO:0007093 IDA mitotic cell cycle checkpoint
GO:0007095 IDA mitotic G2 DNA damage checkpoint
GO:0008134 IPI transcription factor binding
GO:0016605 IDA PML body
GO:0030174 TAS regulation of DNA-dependent DNA replication initiation
GO:0030330 TAS DNA damage response, signal transduction by p53 class mediator
GO:0030870 IDA Mre11 complex
GO:0031954 IDA positive regulation of protein autophosphorylation
GO:0032508 IMP DNA duplex unwinding
GO:0033674 IDA positive regulation of kinase activity
GO:0035861 IDA site of double-strand break
GO:0042405 IDA nuclear inclusion body
GO:0047485 IPI protein N-terminus binding
GO:0051321 IEA meiotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029879 Nbn-001 protein_coding Mus_musculus 0 1458
ENSMUST00000149069 Nbn-002 protein_coding Mus_musculus 0 1284

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