C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nibrin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149069 Nbn-002 ENSMUSG00000028224 10090 + 4:15957967-15981554 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000149069
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000149069 1.304±0.57 15.594±5.26 0.952±0.00 1.462±0.58 3.609±0.19 1.471±0.36 1.859±0.90 2.327±0.72 2.223±0.67 3.011±2.64 1.713±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00015K CIL_00015K_0002 CGP 4:15957925-16013888

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 ISO DNA damage checkpoint
GO:0003684 IDA damaged DNA binding
GO:0005634 IDA nucleus
GO:0005657 IDA replication fork
GO:0007095 IMP mitotic G2 DNA damage checkpoint
GO:0008283 IMP cell proliferation
GO:0050885 IMP neuromuscular process controlling balance
GO:0097193 IMP intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265433 NBN-001 protein_coding Homo_sapiens 0 1319
ENST00000396252 NBN-002 nonsense_mediated_decay Homo_sapiens 0 1134
ENST00000409330 NBN-003 protein_coding Homo_sapiens 0 1284
ENST00000517337 NBN-013 protein_coding Homo_sapiens 0 377
ENST00000517772 NBN-011 protein_coding Homo_sapiens 0 621
ENST00000523444 NBN-009 nonsense_mediated_decay Homo_sapiens 0 198

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