C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tonsoku-like, DNA repair protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409379 TONSL-001 ENSG00000160949 9606 - 8:144428808-144444444 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000409379
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000409379 0.253±0.00 0.660±0.00 0.371±0.00 0.133±0.09 0.690±0.00 0.561±0.00 0.609±0.00 0.162±0.13 0.220±0.00 0.167±0.00 3.832±2.81 2.046±0.47 2.201±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307
CIL_00026P CIL_00026P_0001 CGP 8:144428775-144465677

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005662 IDA DNA replication factor A complex
GO:0005737 IEA cytoplasm
GO:0031297 IMP replication fork processing
GO:0035101 IDA FACT complex
GO:0042393 IDA histone binding
GO:0042555 IDA MCM complex
GO:0042994 TAS cytoplasmic sequestering of transcription factor
GO:0043596 IDA nuclear replication fork
GO:2001141 TAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168185 Tonsl-001 protein_coding Mus_musculus 0 1779
ENSMUST00000165190 Tonsl-002 nonsense_mediated_decay Mus_musculus 0 992
ENSMUST00000168432 Tonsl-004 retained_intron Mus_musculus 0 292

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