C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001HY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000058815-ENSDARG00000058893 CGP 7955 6:6976814-7025878
GeneTranscriptPositionBiotype
ENSDARG00000058815 (ihhb)
Indian hedgehog homolog b 		ENSDART00000081760 (ihhb-001) 6976814-6998923 protein_coding
ENSDART00000122719 (ihhb-002) 6976814-6977901 protein_coding
ENSDARG00000058893 (nhej1)
nonhomologous end-joining factor 1 		ENSDART00000081850 (nhej1-201) 7002711-7024683 protein_coding
ENSDART00000148548 (nhej1-001) 7002704-7025878 protein_coding
ENSDART00000148879 (nhej1-002) 7023632-7025461 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0001HY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163501-ENSG00000187736 CGP 9606 2:219054420-219160865
GeneTranscriptPositionBiotype
ENSG00000163501 (IHH)
indian hedgehog 		ENST00000295731 (IHH-001) 219054420-219060467 protein_coding
ENSG00000187736 (NHEJ1)
nonhomologous end-joining factor 1 		ENST00000356853 (NHEJ1-001) 219075321-219160853 protein_coding
ENST00000409720 (NHEJ1-004) 219075317-219158362 protein_coding
ENST00000418099 (NHEJ1-006) 219075329-219160798 nonsense_mediated_decay
ENST00000426304 (NHEJ1-009) 219076303-219157621 protein_coding
ENST00000450447 (NHEJ1-005) 219146707-219160865 nonsense_mediated_decay
ENST00000457600 (NHEJ1-008) 219078107-219160555 protein_coding
ENST00000481764 (NHEJ1-007) 219158820-219160762 processed_transcript
ENST00000483627 (NHEJ1-010) 219076378-219125660 processed_transcript
ENST00000491159 (NHEJ1-002) 219076318-219125652 processed_transcript
ENST00000494211 (NHEJ1-003) 219076292-219124764 processed_transcript
ENSG00000213901 (SLC23A3)
solute carrier family 23, member 3 		ENST00000295738 (SLC23A3-001) 219161465-219170095 protein_coding
ENST00000318673 (SLC23A3-003) 219075973-219169987 nonsense_mediated_decay
ENST00000409370 (SLC23A3-008) 219168214-219169990 protein_coding
ENST00000409878 (SLC23A3-010) 219161765-219170017 protein_coding
ENST00000414999 (SLC23A3-011) 219167929-219169562 nonsense_mediated_decay
ENST00000421779 (SLC23A3-004) 219168784-219170035 nonsense_mediated_decay
ENST00000430764 (SLC23A3-007) 219168652-219170004 protein_coding
ENST00000455516 (SLC23A3-005) 219161766-219170032 protein_coding
ENST00000461812 (SLC23A3-006) 219169355-219170029 retained_intron
ENST00000465580 (SLC23A3-009) 219168637-219170033 retained_intron
ENST00000497918 (SLC23A3-002) 219164578-219170057 retained_intron
ENST00000498327 (SLC23A3-012) 219075329-219170827 retained_intron
ENSG00000240317 (RN7SL764P)
RNA, 7SL, cytoplasmic 764, pseudogene 		ENST00000487337 (RN7SL764P-201) 219102434-219102719 misc_RNA
ENSG00000272644 (RP11-33O4.1)
 ENST00000607956 (RP11-33O4.1-001) 219069354-219069809 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0001HY_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000006538-ENSMUSG00000026162 CGP 10090 1:74945315-75125200
GeneTranscriptPositionBiotype
ENSMUSG00000006538 (Ihh)
Indian hedgehog 		ENSMUST00000164097 (Ihh-001) 74945315-74951672 protein_coding
ENSMUST00000189364 (Ihh-002) 74947724-74951442 retained_intron
ENSMUSG00000026162 (Nhej1)
nonhomologous end-joining factor 1 		ENSMUST00000152855 (Nhej1-001) 74967139-75046639 protein_coding
ENSMUST00000188033 (Nhej1-002) 75125136-75125200 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HY_0001ENSDARG00000058815ENSDART00000081760ENSDART00000122719ENSDARG00000058893ENSDART00000081850ENSDART00000148548ENSDART00000148879CIL_0001HY_0002ENSG00000163501ENST00000295731ENSG00000187736ENST00000356853ENST00000409720ENST00000418099ENST00000426304ENST00000450447ENST00000457600ENST00000481764ENST00000483627ENST00000491159ENST00000494211ENSG00000213901ENST00000295738ENST00000318673ENST00000409370ENST00000409878ENST00000414999ENST00000421779ENST00000430764ENST00000455516ENST00000461812ENST00000465580ENST00000497918ENST00000498327ENSG00000240317ENST00000487337ENSG00000272644ENST00000607956CIL_0001HY_0003ENSMUSG00000006538ENSMUST00000164097ENSMUST00000189364ENSMUSG00000026162ENSMUST00000152855ENSMUST00000188033
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HY_0001ENSDARG00000058815ENSDART00000081760ENSDART00000122719ENSDARG00000058893ENSDART00000081850ENSDART00000148548ENSDART00000148879CIL_0001HY_0002ENSG00000163501ENST00000295731ENSG00000187736ENST00000356853ENST00000409720ENST00000426304ENST00000450447ENST00000457600ENSG00000213901ENST00000295738ENST00000318673ENST00000498327ENSG00000240317ENST00000487337ENSG00000272644ENST00000607956CIL_0001HY_0003ENSMUSG00000006538ENSMUST00000164097ENSMUST00000189364ENSMUSG00000026162ENSMUST00000152855
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000058815 ENSDART00000081760 N/A N/A N/A 0.101±0.03 N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A
ENSDART00000122719 N/A N/A N/A 0.504±0.24 N/A N/A 0.142±0.00 0.397±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000058893 ENSDART00000081850 N/A N/A N/A 1.234±1.48 N/A N/A 1.853±0.24 4.610±1.30 0.322±0.00 N/A 2.250±0.00 N/A N/A N/A
ENSDART00000148548 N/A N/A N/A 1.343±0.27 N/A N/A N/A N/A N/A N/A 0.371±0.00 N/A N/A N/A
ENSDART00000148879 N/A N/A N/A N/A N/A N/A 0.454±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163501 ENST00000295731 N/A 0.015±0.00 0.267±0.00 0.096±0.00 0.017±0.00 4.620±2.72 N/A 1.371±1.06 0.283±0.00 1.024±0.00 N/A 2.353±2.51 0.065±0.04 0.366±0.20
ENSG00000187736 ENST00000356853 2.678±0.00 4.910±0.00 N/A 1.683±0.00 2.657±0.00 5.974±1.91 0.969±0.29 3.015±2.52 1.541±0.48 3.388±0.00 9.984±0.00 4.206±2.75 2.537±1.21 4.689±0.00
ENST00000409720 1.104±0.00 N/A N/A N/A N/A N/A 0.395±0.00 N/A N/A 1.742±0.00 1.202±0.00 1.224±0.00 2.088±0.00 5.085±2.28
ENST00000418099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426304 N/A N/A N/A 1.236±0.00 3.550±0.00 N/A 0.436±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000450447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.194±0.00 3.845±0.00 3.410±0.00 N/A
ENST00000457600 N/A N/A N/A N/A N/A N/A 0.710±0.00 N/A N/A N/A N/A 1.645±0.00 N/A 18.246±0.00
ENST00000481764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213901 ENST00000295738 N/A N/A 2.630±0.00 N/A N/A N/A N/A 3.813±0.00 N/A N/A N/A N/A N/A N/A
ENST00000318673 N/A N/A 2.326±0.00 N/A N/A N/A N/A N/A N/A 0.586±0.00 N/A N/A N/A N/A
ENST00000409370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498327 N/A N/A N/A N/A N/A N/A N/A 1.187±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000240317 ENST00000487337 N/A 0.209±0.00 N/A N/A N/A 0.066±0.00 0.068±0.00 0.362±0.00 N/A 0.413±0.00 0.130±0.00 N/A N/A N/A
ENSG00000272644 ENST00000607956 0.675±0.00 0.482±0.00 N/A 1.306±0.86 1.743±0.00 1.449±0.37 0.649±0.00 1.781±0.89 0.639±0.05 0.834±0.00 3.641±0.00 1.641±0.75 0.650±0.17 1.654±0.61
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006538 ENSMUST00000164097 6.166±6.10 0.077±0.05 0.084±0.00 0.164±0.04 0.066±0.03 59.281±6.59 0.045±0.03 13.796±3.69 1.630±1.32 0.267±0.13 0.058±0.03 31.876±12.96 2.259±1.97 0.206±0.15
ENSMUST00000189364 N/A 0.022±0.00 N/A N/A 0.036±0.00 N/A N/A N/A 0.797±0.80 N/A 0.076±0.00 12.230±4.24 1.750±1.52 N/A
ENSMUSG00000026162 ENSMUST00000152855 2.337±0.27 2.604±0.63 1.812±0.06 0.971±0.12 2.433±0.46 1.905±0.68 1.638±0.35 1.964±0.51 1.448±0.58 1.534±0.20 2.025±0.43 2.352±0.71 1.605±0.47 3.830±1.31
ENSMUST00000188033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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