C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413568 RP11-378J18.6-001 ENSG00000229399 9606 - 1:222641414-222641858 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungOvaryTestisENST00000413568
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Ovary Testis
ENST00000413568 0.031±0.00 0.168±0.00 0.034±0.00 0.607±0.58 0.408±0.38 0.301±0.27 1.919±0.00 0.096±0.00 0.335±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166658 Pfdn5-001 protein_coding Mus_musculus 0 433
ENSMUST00000122039 Gm5644-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000168805 Pfdn5-005 retained_intron Mus_musculus 0 193
ENSMUST00000001335 Pfdn5-003 nonsense_mediated_decay Mus_musculus 0 191
ENSMUST00000062492 Pfdn5-006 protein_coding Mus_musculus 0.0000000000001 81

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