C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prefoldin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001335 Pfdn5-003 ENSMUSG00000001289 10090 + 15:102326189-102331486 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaTestisENSMUST00000001335
Transcript ID Brain Muscle Ovary Placenta Testis
ENSMUST00000001335 111.041±0.00 29.588±5.46 195.253±18.46 99.148±14.16 195.882±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001IH CIL_0001IH_0002 CGP 15:102296293-102331873
CIL_00060P CIL_00060P_0002 CGP 15:102326116-102338139

Gene Ontology

GO IDEvidence TypeGO Description
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243040 PFDN5-003 nonsense_mediated_decay Homo_sapiens 0 597
ENST00000334478 PFDN5-005 protein_coding Homo_sapiens 0 318
ENST00000351500 PFDN5-004 protein_coding Homo_sapiens 0 320
ENST00000413568 RP11-378J18.6-001 processed_pseudogene Homo_sapiens 0 191
ENST00000547130 PFDN5-009 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000547228 PFDN5-007 retained_intron Homo_sapiens 0 265
ENST00000548984 PFDN5-010 retained_intron Homo_sapiens 0 250
ENST00000549759 PFDN5-013 protein_coding Homo_sapiens 0 320
ENST00000549995 PFDN5-016 retained_intron Homo_sapiens 0 279
ENST00000550069 PFDN5-008 retained_intron Homo_sapiens 0 279
ENST00000550513 PFDN5-021 retained_intron Homo_sapiens 4.00001e-41 172
ENST00000550846 PFDN5-019 protein_coding Homo_sapiens 0 250
ENST00000550880 PFDN5-006 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000550964 PFDN5-018 retained_intron Homo_sapiens 0 320
ENST00000551018 PFDN5-001 protein_coding Homo_sapiens 0 318
ENST00000551223 PFDN5-014 retained_intron Homo_sapiens 0 281
ENST00000552341 PFDN5-002 retained_intron Homo_sapiens 0 320
ENST00000552548 PFDN5-020 retained_intron Homo_sapiens 0 303
ENST00000552742 PFDN5-015 nonsense_mediated_decay Homo_sapiens 0 250

Loading