C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prefoldin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166658 Pfdn5-001 ENSMUSG00000001289 10090 + 15:102326116-102331873 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000166658
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000166658 67.522±3.83 20.055±2.47 163.226±27.62 119.392±3.65 47.179±19.01 34.388±6.27 55.376±7.52 89.159±5.26 39.062±25.14 50.214±4.85 32.008±4.04 69.554±11.54 77.577±2.65 193.301±4.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001IH CIL_0001IH_0002 CGP 15:102296293-102331873
CIL_00060P CIL_00060P_0002 CGP 15:102326116-102338139

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006457 IEA protein folding
GO:0016272 IEA prefoldin complex
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0051082 IEA unfolded protein binding
GO:0060041 IMP retina development in camera-type eye
GO:0090090 IEA negative regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243040 PFDN5-003 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000334478 PFDN5-005 protein_coding Homo_sapiens 0 664
ENST00000351500 PFDN5-004 protein_coding Homo_sapiens 0 318
ENST00000413568 RP11-378J18.6-001 processed_pseudogene Homo_sapiens 0 433
ENST00000547130 PFDN5-009 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000547228 PFDN5-007 retained_intron Homo_sapiens 0 267
ENST00000548984 PFDN5-010 retained_intron Homo_sapiens 0 250
ENST00000549759 PFDN5-013 protein_coding Homo_sapiens 0 531
ENST00000549995 PFDN5-016 retained_intron Homo_sapiens 0 300
ENST00000550069 PFDN5-008 retained_intron Homo_sapiens 0 307
ENST00000550513 PFDN5-021 retained_intron Homo_sapiens 9.99967e-42 174
ENST00000550846 PFDN5-019 protein_coding Homo_sapiens 0 250
ENST00000550880 PFDN5-006 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000550964 PFDN5-018 retained_intron Homo_sapiens 0 318
ENST00000551018 PFDN5-001 protein_coding Homo_sapiens 0 693
ENST00000551223 PFDN5-014 retained_intron Homo_sapiens 0 298
ENST00000552341 PFDN5-002 retained_intron Homo_sapiens 0 318
ENST00000552548 PFDN5-020 retained_intron Homo_sapiens 0 355
ENST00000552742 PFDN5-015 nonsense_mediated_decay Homo_sapiens 0 250

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