C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: topoisomerase (DNA) II beta 180kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413971 TOP2B-005 ENSG00000077097 9606 - 3:25597984-25618849 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000413971
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000413971 9.522±0.00 20.469±0.00 21.162±0.00 16.725±0.00 22.833±0.00 16.787±0.00 7.657±0.00 16.476±0.00 4.069±2.36 17.836±6.15 10.820±1.86 20.415±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003918 IEA DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006265 IEA DNA topological change
GO:0008301 IEA DNA binding, bending

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017629 Top2b-001 protein_coding Mus_musculus 0 2494
ENSMUST00000161693 Top2b-006 protein_coding Mus_musculus 0 878
ENSMUST00000159302 Top2b-004 nonsense_mediated_decay Mus_musculus 0 518
ENSMUST00000160501 Top2b-003 protein_coding Mus_musculus 0 324
ENSMUST00000163032 Top2b-005 retained_intron Mus_musculus 0 305

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