C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spastic paraplegia 21 (autosomal recessive, Mast syndrome)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416889 SPG21-003 ENSG00000090487 9606 - 15:64963204-64989911 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000416889
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000416889 7.352±0.00 7.522±0.00 7.842±0.00 3.138±2.21 7.163±0.00 6.934±0.00 11.368±0.00 13.962±0.00 13.237±0.00 24.647±0.00 13.368±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RY CIL_0007RY_0001 VISTA 15:64785331-65389080
CIL_0004WJ CIL_0004WJ_0002 CGP 15:64911902-64990310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0008219 IEA cell death
GO:0016020 IEA membrane
GO:0030140 IDA trans-Golgi network transport vesicle
GO:0042609 IPI CD4 receptor binding
GO:0050851 IC antigen receptor-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034955 Spg21-201 protein_coding Mus_musculus 0 684

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