C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spastic paraplegia 21 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034955 Spg21-201 ENSMUSG00000032388 10090 + 9:65460937-65488470 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034955
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034955 20.200±4.64 17.781±2.42 13.756±1.44 9.942±4.55 18.614±2.93 8.872±1.00 3.918±0.43 17.372±0.68 6.059±1.07 16.622±0.66 2.600±0.42 15.825±5.07 9.084±2.58 4.327±1.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RY CIL_0007RY_0002 VISTA 9:65081642-65684657

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0008150 ND biological_process
GO:0030140 ISS trans-Golgi network transport vesicle
GO:0042609 ISS CD4 receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000204566 SPG21-001 protein_coding Homo_sapiens 0 1142
ENST00000416889 SPG21-003 protein_coding Homo_sapiens 0 684
ENST00000433215 SPG21-005 protein_coding Homo_sapiens 0 1107
ENST00000557795 SPG21-011 protein_coding Homo_sapiens 0 568
ENST00000558765 SPG21-010 protein_coding Homo_sapiens 0 606
ENST00000559199 SPG21-002 protein_coding Homo_sapiens 0 1014
ENST00000559677 SPG21-006 protein_coding Homo_sapiens 0 429
ENST00000560564 SPG21-007 processed_transcript Homo_sapiens 0 429
ENST00000561078 SPG21-004 nonsense_mediated_decay Homo_sapiens 0 503

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