C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420122 RP11-443F16.1-001 ENSG00000237162 9606 + 2:62939916-62940282 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000420122
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000420122 0.179±0.00 0.261±0.00 1.043±0.00 0.706±0.59 0.615±0.58 0.424±0.39 0.034±0.00 1.161±0.98 1.248±1.02 0.911±0.67 0.033±0.00 0.569±0.00 0.033±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000976 CIL_000976_0001 VISTA 2:62666720-63267794
CIL_0000RR CIL_0000RR_0002 CGP 2:62673851-63057836
CIL_00084N CIL_00084N_0001 VISTA 2:62678793-63279521
CIL_00090Q CIL_00090Q_0001 VISTA 2:62740879-63342178
CIL_00095K CIL_00095K_0001 VISTA 2:62748560-63349968
CIL_0007MW CIL_0007MW_0001 UCNEbase 2:62787578-63424747

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103009 Rps20-002 retained_intron Mus_musculus 0 278
ENSMUST00000138502 Rps20-001 protein_coding Mus_musculus 0 278
ENSMUST00000130128 Rps20-003 retained_intron Mus_musculus 0 261
ENSMUST00000154056 Gm4997-001 processed_pseudogene Mus_musculus 0 250

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