| Source ID |
Type |
Tax ID |
Position |
| OTX1 |
UCNEbase |
7955 |
1:51416749-51416920  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007MW_0004 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007MW_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MW_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MW_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000115504' => 'EH domain binding protein 1',
'ENSG00000115507' => 'orthodenticle homeobox 1',
'ENSG00000143951' => 'WD repeat containing planar cell polarity effector',
'ENSG00000226605' => null,
'ENSG00000231609' => null,
'ENSG00000232403' => null,
'ENSG00000233716' => null,
'ENSG00000237162' => null,
'ENSG00000242412' => 'diazepam binding inhibitor-like 5 pseudogene 2',
'ENSG00000270437' => null,
'ENSG00000276843' => 'Metazoan signal recognition particle RNA',
'ENSMUSG00000005917' => 'orthodenticle homolog 1',
'ENSMUSG00000020319' => 'WD repeat containing planar cell polarity effector',
'ENSMUSG00000042302' => 'EH domain binding protein 1',
'ENSMUSG00000082874' => 'ribosomal protein L15, pseudogene 1',
'ENSMUSG00000084004' => 'predicted gene 12047',
'ENSDARG00000043643' => 'EH domain binding protein 1',
'ENSDARG00000074590' => 'WD repeat containing planar cell polarity effector',
'ENSDARG00000094992' => 'orthodenticle homolog 1b',
'ENSDARG00000097512' => 'si:dkeyp-74f1.2'
),
'gene_name_arr' => array(
'ENSG00000115504' => 'EHBP1',
'ENSG00000115507' => 'OTX1',
'ENSG00000143951' => 'WDPCP',
'ENSG00000226605' => 'AC007098.1',
'ENSG00000231609' => 'AC009501.4',
'ENSG00000232403' => 'RP11-511I11.1',
'ENSG00000233716' => 'AC074367.1',
'ENSG00000237162' => 'RP11-443F16.1',
'ENSG00000242412' => 'DBIL5P2',
'ENSG00000270437' => 'RP11-511I11.2',
'ENSG00000276843' => 'Metazoa_SRP',
'ENSMUSG00000005917' => 'Otx1',
'ENSMUSG00000020319' => 'Wdpcp',
'ENSMUSG00000042302' => 'Ehbp1',
'ENSMUSG00000082874' => 'Rpl15-ps1',
'ENSMUSG00000084004' => 'Gm12047',
'ENSDARG00000043643' => 'ehbp1',
'ENSDARG00000074590' => 'wdpcp',
'ENSDARG00000094992' => 'otx1b',
'ENSDARG00000097512' => 'si:dkeyp-74f1.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 26 => 'Brain',
(int) 48 => 'Breast',
(int) 60 => 'Colon',
(int) 73 => 'Heart',
(int) 86 => 'Kidney',
(int) 100 => 'Liver',
(int) 117 => 'Lung',
(int) 130 => 'Muscle',
(int) 139 => 'Ovary',
(int) 155 => 'Placenta',
(int) 169 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 82,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000263991' => array(
'start' => '62705866',
'end' => '63046487',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-001'
),
'ENST00000405015' => array(
'start' => '62673851',
'end' => '63045597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-002'
),
'ENST00000405289' => array(
'start' => '62707192',
'end' => '63045500',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-007'
),
'ENST00000405482' => array(
'start' => '62705652',
'end' => '62864904',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-005'
),
'ENST00000413434' => array(
'start' => '62673878',
'end' => '62826195',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-014'
),
'ENST00000422032' => array(
'start' => '62955615',
'end' => '62993976',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-017'
),
'ENST00000426940' => array(
'start' => '62673878',
'end' => '62826258',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-010'
),
'ENST00000427809' => array(
'start' => '62705652',
'end' => '62764336',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-011'
),
'ENST00000431489' => array(
'start' => '62705742',
'end' => '63046487',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-003'
),
'ENST00000444311' => array(
'start' => '62948292',
'end' => '62988004',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-016'
),
'ENST00000449820' => array(
'start' => '62673878',
'end' => '62858416',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-013'
),
'ENST00000454124' => array(
'start' => '62948933',
'end' => '62979286',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-015'
),
'ENST00000462441' => array(
'start' => '62872038',
'end' => '62881777',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'EHBP1-021'
),
'ENST00000467436' => array(
'start' => '62706313',
'end' => '62706992',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'EHBP1-012'
),
'ENST00000469591' => array(
'start' => '62942718',
'end' => '62956117',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-020'
),
'ENST00000471179' => array(
'start' => '63044839',
'end' => '63045655',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-019'
),
'ENST00000472809' => array(
'start' => '62705712',
'end' => '62772134',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-006'
),
'ENST00000491965' => array(
'start' => '62979323',
'end' => '62994177',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-018'
),
'ENST00000494958' => array(
'start' => '62705712',
'end' => '62826581',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-004'
),
'ENST00000496857' => array(
'start' => '62964962',
'end' => '63045663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'EHBP1-009'
),
'ENST00000282549' => array(
'start' => '63050802',
'end' => '63057836',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OTX1-001'
),
'ENST00000366671' => array(
'start' => '63050057',
'end' => '63057836',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OTX1-002'
),
'ENST00000405984' => array(
'start' => '63050831',
'end' => '63056583',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OTX1-005'
),
'ENST00000476383' => array(
'start' => '63050851',
'end' => '63052207',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'OTX1-006'
),
'ENST00000477348' => array(
'start' => '63050830',
'end' => '63051804',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'OTX1-004'
),
'ENST00000484066' => array(
'start' => '63050741',
'end' => '63053546',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'OTX1-003'
),
'ENST00000272321' => array(
'start' => '63121383',
'end' => '63588799',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-002'
),
'ENST00000398544' => array(
'start' => '63121831',
'end' => '63438007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-007'
),
'ENST00000409120' => array(
'start' => '63121814',
'end' => '63443230',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-001'
),
'ENST00000409199' => array(
'start' => '63121402',
'end' => '63477934',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-008'
),
'ENST00000409354' => array(
'start' => '63121383',
'end' => '63433930',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WDPCP-009'
),
'ENST00000409562' => array(
'start' => '63228388',
'end' => '63588518',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-005'
),
'ENST00000409835' => array(
'start' => '63359795',
'end' => '63588518',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-004'
),
'ENST00000417238' => array(
'start' => '63368823',
'end' => '63588518',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WDPCP-003'
),
'ENST00000418148' => array(
'start' => '63437457',
'end' => '63588266',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WDPCP-012'
),
'ENST00000431065' => array(
'start' => '63484942',
'end' => '63588799',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-011'
),
'ENST00000462652' => array(
'start' => '63377849',
'end' => '63382074',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'WDPCP-014'
),
'ENST00000467687' => array(
'start' => '63487472',
'end' => '63827843',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-017'
),
'ENST00000473678' => array(
'start' => '63437453',
'end' => '63441043',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-013'
),
'ENST00000484073' => array(
'start' => '63564175',
'end' => '63588500',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-010'
),
'ENST00000487280' => array(
'start' => '63121734',
'end' => '63153114',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'WDPCP-015'
),
'ENST00000490935' => array(
'start' => '63484604',
'end' => '63827843',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-016'
),
'ENST00000493315' => array(
'start' => '63403709',
'end' => '63484689',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'WDPCP-006'
),
'ENST00000452397' => array(
'start' => '62826064',
'end' => '62858438',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC007098.1-001'
),
'ENST00000412297' => array(
'start' => '63045176',
'end' => '63046609',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-004'
),
'ENST00000413549' => array(
'start' => '63045311',
'end' => '63048521',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-003'
),
'ENST00000429952' => array(
'start' => '63043922',
'end' => '63047711',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-001'
),
'ENST00000437346' => array(
'start' => '63045061',
'end' => '63048640',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-002'
),
'ENST00000428700' => array(
'start' => '63108118',
'end' => '63108429',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-511I11.1-001'
),
'ENST00000438685' => array(
'start' => '63232453',
'end' => '63233577',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC074367.1-001'
),
'ENST00000420122' => array(
'start' => '62939916',
'end' => '62940282',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-443F16.1-001'
),
'ENST00000443827' => array(
'start' => '63119011',
'end' => '63119263',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'DBIL5P2-001'
),
'ENST00000491724' => array(
'start' => '63117851',
'end' => '63119542',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DBIL5P2-002'
),
'ENST00000605001' => array(
'start' => '63083008',
'end' => '63087322',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-511I11.2-001'
),
'ENST00000611643' => array(
'start' => '63168600',
'end' => '63168847',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-395'
),
'ENSMUST00000006071' => array(
'start' => '21994764',
'end' => '22001615',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Otx1-001'
),
'ENSMUST00000147486' => array(
'start' => '21996858',
'end' => '22002897',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Otx1-003'
),
'ENSMUST00000172395' => array(
'start' => '21994769',
'end' => '22001710',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Otx1-002'
),
'ENSMUST00000020568' => array(
'start' => '21572235',
'end' => '21898989',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wdpcp-002'
),
'ENSMUST00000128794' => array(
'start' => '21813399',
'end' => '21817341',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-003'
),
'ENSMUST00000131135' => array(
'start' => '21572235',
'end' => '21664385',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wdpcp-005'
),
'ENSMUST00000143608' => array(
'start' => '21689583',
'end' => '21711910',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-006'
),
'ENSMUST00000149757' => array(
'start' => '21572305',
'end' => '21697568',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-004'
),
'ENSMUST00000156624' => array(
'start' => '21695129',
'end' => '21749350',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-001'
),
'ENSMUST00000045167' => array(
'start' => '22005828',
'end' => '22285838',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-001'
),
'ENSMUST00000109563' => array(
'start' => '22005828',
'end' => '22286795',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-201'
),
'ENSMUST00000134293' => array(
'start' => '22146532',
'end' => '22285872',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-002'
),
'ENSMUST00000136762' => array(
'start' => '22169037',
'end' => '22171410',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ehbp1-005'
),
'ENSMUST00000137594' => array(
'start' => '22232002',
'end' => '22342292',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ehbp1-003'
),
'ENSMUST00000152372' => array(
'start' => '22110353',
'end' => '22173006',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ehbp1-004'
),
'ENSMUST00000180360' => array(
'start' => '22005828',
'end' => '22286795',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-202'
),
'ENSMUST00000120694' => array(
'start' => '21953140',
'end' => '21953703',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl15-ps1-001'
),
'ENSMUST00000117561' => array(
'start' => '21877007',
'end' => '21877950',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm12047-001'
),
'ENSDART00000064067' => array(
'start' => '23939549',
'end' => '24152448',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ehbp1-201'
),
'ENSDART00000155191' => array(
'start' => '24104942',
'end' => '24132574',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ehbp1-002'
),
'ENSDART00000156251' => array(
'start' => '23937169',
'end' => '24143472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ehbp1-001'
),
'ENSDART00000112665' => array(
'start' => '24159122',
'end' => '24236178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wdpcp-201'
),
'ENSDART00000155020' => array(
'start' => '24159205',
'end' => '24267829',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wdpcp-001'
),
'ENSDART00000155192' => array(
'start' => '24177722',
'end' => '24192684',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wdpcp-002'
),
'ENSDART00000064083' => array(
'start' => '24146910',
'end' => '24152572',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'otx1b-001'
),
'ENSDART00000155255' => array(
'start' => '24138108',
'end' => '24145560',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:dkeyp-74f1.2-002'
),
'ENSDART00000156293' => array(
'start' => '24141701',
'end' => '24146678',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:dkeyp-74f1.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007MW_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MW_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MW_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007MW_0001' => array(
'genes_in_region' => array(
'ENSG00000115504' => array(
[maximum depth reached]
),
'ENSG00000115507' => array(
[maximum depth reached]
),
'ENSG00000232403' => array(
[maximum depth reached]
),
'ENSG00000233716' => array(
[maximum depth reached]
),
'ENSG00000237162' => array(
[maximum depth reached]
),
'ENSG00000242412' => array(
[maximum depth reached]
),
'ENSG00000276843' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Testis',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Lung',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 19 => 'Bladder',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Muscle',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Testis',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Breast',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Brain',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Brain',
(int) 52 => 'Breast',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Adrenal',
(int) 56 => 'Testis',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Lung',
(int) 61 => 'Testis',
(int) 62 => 'Adrenal',
(int) 63 => 'Brain',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Bladder',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Ovary',
(int) 77 => 'Placenta',
(int) 78 => 'Testis',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Kidney',
(int) 87 => 'Liver',
(int) 88 => 'Lung',
(int) 89 => 'Muscle',
(int) 90 => 'Ovary',
(int) 91 => 'Testis',
(int) 92 => 'Heart',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Adrenal',
(int) 96 => 'Bladder',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Colon',
(int) 100 => 'Heart',
(int) 101 => 'Lung',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Colon',
(int) 106 => 'Liver',
(int) 107 => 'Lung',
(int) 108 => 'Muscle'
)
),
'CIL_0007MW_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000005917' => array(
[maximum depth reached]
),
'ENSMUSG00000020319' => array(
[maximum depth reached]
),
'ENSMUSG00000042302' => array(
[maximum depth reached]
),
'ENSMUSG00000082874' => array(
[maximum depth reached]
),
'ENSMUSG00000084004' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Colon',
(int) 13 => 'Ovary',
(int) 14 => 'Placenta',
(int) 15 => 'Testis',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Testis',
(int) 25 => 'Brain',
(int) 26 => 'Colon',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Bladder',
(int) 33 => 'Liver',
(int) 34 => 'Muscle',
(int) 35 => 'Testis',
(int) 36 => 'Breast',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Bladder',
(int) 41 => 'Brain',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Liver',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Adrenal',
(int) 55 => 'Bladder',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis'
)
),
'CIL_0007MW_0005' => array(
'genes_in_region' => array(
'ENSDARG00000043643' => array(
[maximum depth reached]
),
'ENSDARG00000074590' => array(
[maximum depth reached]
),
'ENSDARG00000094992' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Brain',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Muscle',
(int) 7 => 'Brain',
(int) 8 => 'Liver',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Brain',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000115504' => 'EH domain binding protein 1',
'ENSG00000115507' => 'orthodenticle homeobox 1',
'ENSG00000143951' => 'WD repeat containing planar cell polarity effector',
'ENSG00000226605' => null,
'ENSG00000231609' => null,
'ENSG00000232403' => null,
'ENSG00000233716' => null,
'ENSG00000237162' => null,
'ENSG00000242412' => 'diazepam binding inhibitor-like 5 pseudogene 2',
'ENSG00000270437' => null,
'ENSG00000276843' => 'Metazoan signal recognition particle RNA',
'ENSMUSG00000005917' => 'orthodenticle homolog 1',
'ENSMUSG00000020319' => 'WD repeat containing planar cell polarity effector',
'ENSMUSG00000042302' => 'EH domain binding protein 1',
'ENSMUSG00000082874' => 'ribosomal protein L15, pseudogene 1',
'ENSMUSG00000084004' => 'predicted gene 12047',
'ENSDARG00000043643' => 'EH domain binding protein 1',
'ENSDARG00000074590' => 'WD repeat containing planar cell polarity effector',
'ENSDARG00000094992' => 'orthodenticle homolog 1b',
'ENSDARG00000097512' => 'si:dkeyp-74f1.2'
)
$gene_name_arr = array(
'ENSG00000115504' => 'EHBP1',
'ENSG00000115507' => 'OTX1',
'ENSG00000143951' => 'WDPCP',
'ENSG00000226605' => 'AC007098.1',
'ENSG00000231609' => 'AC009501.4',
'ENSG00000232403' => 'RP11-511I11.1',
'ENSG00000233716' => 'AC074367.1',
'ENSG00000237162' => 'RP11-443F16.1',
'ENSG00000242412' => 'DBIL5P2',
'ENSG00000270437' => 'RP11-511I11.2',
'ENSG00000276843' => 'Metazoa_SRP',
'ENSMUSG00000005917' => 'Otx1',
'ENSMUSG00000020319' => 'Wdpcp',
'ENSMUSG00000042302' => 'Ehbp1',
'ENSMUSG00000082874' => 'Rpl15-ps1',
'ENSMUSG00000084004' => 'Gm12047',
'ENSDARG00000043643' => 'ehbp1',
'ENSDARG00000074590' => 'wdpcp',
'ENSDARG00000094992' => 'otx1b',
'ENSDARG00000097512' => 'si:dkeyp-74f1.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MW_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '62787578',
'seq_end' => '63424747',
'region_length' => '637169',
'region_type' => 'UCNEbase',
'el_id' => 'OTX1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MW_0002',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '63424748',
'seq_end' => '63435010',
'region_length' => '10262',
'region_type' => 'UCNEbase',
'el_id' => 'OTX1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MW_0003',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '21694041',
'seq_end' => '22206768',
'region_length' => '512727',
'region_type' => 'UCNEbase',
'el_id' => 'OTX1'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MW_0004',
'tax_id' => '7955',
'chromosome' => '1',
'seq_start' => '51416749',
'seq_end' => '51416920',
'region_length' => '171',
'region_type' => 'UCNEbase',
'el_id' => 'OTX1'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MW_0005',
'tax_id' => '7955',
'chromosome' => '17',
'seq_start' => '24068085',
'seq_end' => '24218460',
'region_length' => '150375',
'region_type' => 'UCNEbase',
'el_id' => 'OTX1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 26 => 'Brain',
(int) 48 => 'Breast',
(int) 60 => 'Colon',
(int) 73 => 'Heart',
(int) 86 => 'Kidney',
(int) 100 => 'Liver',
(int) 117 => 'Lung',
(int) 130 => 'Muscle',
(int) 139 => 'Ovary',
(int) 155 => 'Placenta',
(int) 169 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 82
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000263991' => array(
'start' => '62705866',
'end' => '63046487',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-001'
),
'ENST00000405015' => array(
'start' => '62673851',
'end' => '63045597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-002'
),
'ENST00000405289' => array(
'start' => '62707192',
'end' => '63045500',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-007'
),
'ENST00000405482' => array(
'start' => '62705652',
'end' => '62864904',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-005'
),
'ENST00000413434' => array(
'start' => '62673878',
'end' => '62826195',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-014'
),
'ENST00000422032' => array(
'start' => '62955615',
'end' => '62993976',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-017'
),
'ENST00000426940' => array(
'start' => '62673878',
'end' => '62826258',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-010'
),
'ENST00000427809' => array(
'start' => '62705652',
'end' => '62764336',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-011'
),
'ENST00000431489' => array(
'start' => '62705742',
'end' => '63046487',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-003'
),
'ENST00000444311' => array(
'start' => '62948292',
'end' => '62988004',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-016'
),
'ENST00000449820' => array(
'start' => '62673878',
'end' => '62858416',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-013'
),
'ENST00000454124' => array(
'start' => '62948933',
'end' => '62979286',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-015'
),
'ENST00000462441' => array(
'start' => '62872038',
'end' => '62881777',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'EHBP1-021'
),
'ENST00000467436' => array(
'start' => '62706313',
'end' => '62706992',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'EHBP1-012'
),
'ENST00000469591' => array(
'start' => '62942718',
'end' => '62956117',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-020'
),
'ENST00000471179' => array(
'start' => '63044839',
'end' => '63045655',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-019'
),
'ENST00000472809' => array(
'start' => '62705712',
'end' => '62772134',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-006'
),
'ENST00000491965' => array(
'start' => '62979323',
'end' => '62994177',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-018'
),
'ENST00000494958' => array(
'start' => '62705712',
'end' => '62826581',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-004'
),
'ENST00000496857' => array(
'start' => '62964962',
'end' => '63045663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'EHBP1-009'
),
'ENST00000282549' => array(
'start' => '63050802',
'end' => '63057836',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OTX1-001'
),
'ENST00000366671' => array(
'start' => '63050057',
'end' => '63057836',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OTX1-002'
),
'ENST00000405984' => array(
'start' => '63050831',
'end' => '63056583',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OTX1-005'
),
'ENST00000476383' => array(
'start' => '63050851',
'end' => '63052207',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'OTX1-006'
),
'ENST00000477348' => array(
'start' => '63050830',
'end' => '63051804',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'OTX1-004'
),
'ENST00000484066' => array(
'start' => '63050741',
'end' => '63053546',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'OTX1-003'
),
'ENST00000272321' => array(
'start' => '63121383',
'end' => '63588799',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-002'
),
'ENST00000398544' => array(
'start' => '63121831',
'end' => '63438007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-007'
),
'ENST00000409120' => array(
'start' => '63121814',
'end' => '63443230',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-001'
),
'ENST00000409199' => array(
'start' => '63121402',
'end' => '63477934',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-008'
),
'ENST00000409354' => array(
'start' => '63121383',
'end' => '63433930',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WDPCP-009'
),
'ENST00000409562' => array(
'start' => '63228388',
'end' => '63588518',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-005'
),
'ENST00000409835' => array(
'start' => '63359795',
'end' => '63588518',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-004'
),
'ENST00000417238' => array(
'start' => '63368823',
'end' => '63588518',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WDPCP-003'
),
'ENST00000418148' => array(
'start' => '63437457',
'end' => '63588266',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WDPCP-012'
),
'ENST00000431065' => array(
'start' => '63484942',
'end' => '63588799',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-011'
),
'ENST00000462652' => array(
'start' => '63377849',
'end' => '63382074',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'WDPCP-014'
),
'ENST00000467687' => array(
'start' => '63487472',
'end' => '63827843',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-017'
),
'ENST00000473678' => array(
'start' => '63437453',
'end' => '63441043',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-013'
),
'ENST00000484073' => array(
'start' => '63564175',
'end' => '63588500',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-010'
),
'ENST00000487280' => array(
'start' => '63121734',
'end' => '63153114',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'WDPCP-015'
),
'ENST00000490935' => array(
'start' => '63484604',
'end' => '63827843',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-016'
),
'ENST00000493315' => array(
'start' => '63403709',
'end' => '63484689',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'WDPCP-006'
),
'ENST00000452397' => array(
'start' => '62826064',
'end' => '62858438',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC007098.1-001'
),
'ENST00000412297' => array(
'start' => '63045176',
'end' => '63046609',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-004'
),
'ENST00000413549' => array(
'start' => '63045311',
'end' => '63048521',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-003'
),
'ENST00000429952' => array(
'start' => '63043922',
'end' => '63047711',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-001'
),
'ENST00000437346' => array(
'start' => '63045061',
'end' => '63048640',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-002'
),
'ENST00000428700' => array(
'start' => '63108118',
'end' => '63108429',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-511I11.1-001'
),
'ENST00000438685' => array(
'start' => '63232453',
'end' => '63233577',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC074367.1-001'
),
'ENST00000420122' => array(
'start' => '62939916',
'end' => '62940282',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-443F16.1-001'
),
'ENST00000443827' => array(
'start' => '63119011',
'end' => '63119263',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'DBIL5P2-001'
),
'ENST00000491724' => array(
'start' => '63117851',
'end' => '63119542',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DBIL5P2-002'
),
'ENST00000605001' => array(
'start' => '63083008',
'end' => '63087322',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-511I11.2-001'
),
'ENST00000611643' => array(
'start' => '63168600',
'end' => '63168847',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-395'
),
'ENSMUST00000006071' => array(
'start' => '21994764',
'end' => '22001615',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Otx1-001'
),
'ENSMUST00000147486' => array(
'start' => '21996858',
'end' => '22002897',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Otx1-003'
),
'ENSMUST00000172395' => array(
'start' => '21994769',
'end' => '22001710',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Otx1-002'
),
'ENSMUST00000020568' => array(
'start' => '21572235',
'end' => '21898989',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wdpcp-002'
),
'ENSMUST00000128794' => array(
'start' => '21813399',
'end' => '21817341',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-003'
),
'ENSMUST00000131135' => array(
'start' => '21572235',
'end' => '21664385',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wdpcp-005'
),
'ENSMUST00000143608' => array(
'start' => '21689583',
'end' => '21711910',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-006'
),
'ENSMUST00000149757' => array(
'start' => '21572305',
'end' => '21697568',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-004'
),
'ENSMUST00000156624' => array(
'start' => '21695129',
'end' => '21749350',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-001'
),
'ENSMUST00000045167' => array(
'start' => '22005828',
'end' => '22285838',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-001'
),
'ENSMUST00000109563' => array(
'start' => '22005828',
'end' => '22286795',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-201'
),
'ENSMUST00000134293' => array(
'start' => '22146532',
'end' => '22285872',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-002'
),
'ENSMUST00000136762' => array(
'start' => '22169037',
'end' => '22171410',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ehbp1-005'
),
'ENSMUST00000137594' => array(
'start' => '22232002',
'end' => '22342292',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ehbp1-003'
),
'ENSMUST00000152372' => array(
'start' => '22110353',
'end' => '22173006',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ehbp1-004'
),
'ENSMUST00000180360' => array(
'start' => '22005828',
'end' => '22286795',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-202'
),
'ENSMUST00000120694' => array(
'start' => '21953140',
'end' => '21953703',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl15-ps1-001'
),
'ENSMUST00000117561' => array(
'start' => '21877007',
'end' => '21877950',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm12047-001'
),
'ENSDART00000064067' => array(
'start' => '23939549',
'end' => '24152448',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ehbp1-201'
),
'ENSDART00000155191' => array(
'start' => '24104942',
'end' => '24132574',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ehbp1-002'
),
'ENSDART00000156251' => array(
'start' => '23937169',
'end' => '24143472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ehbp1-001'
),
'ENSDART00000112665' => array(
'start' => '24159122',
'end' => '24236178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wdpcp-201'
),
'ENSDART00000155020' => array(
'start' => '24159205',
'end' => '24267829',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wdpcp-001'
),
'ENSDART00000155192' => array(
'start' => '24177722',
'end' => '24192684',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wdpcp-002'
),
'ENSDART00000064083' => array(
'start' => '24146910',
'end' => '24152572',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'otx1b-001'
),
'ENSDART00000155255' => array(
'start' => '24138108',
'end' => '24145560',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:dkeyp-74f1.2-002'
),
'ENSDART00000156293' => array(
'start' => '24141701',
'end' => '24146678',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:dkeyp-74f1.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007MW_0001' => array(
'genes_in_region' => array(
'ENSG00000115504' => array(
[maximum depth reached]
),
'ENSG00000115507' => array(
[maximum depth reached]
),
'ENSG00000232403' => array(
[maximum depth reached]
),
'ENSG00000233716' => array(
[maximum depth reached]
),
'ENSG00000237162' => array(
[maximum depth reached]
),
'ENSG00000242412' => array(
[maximum depth reached]
),
'ENSG00000276843' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Testis',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Lung',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 19 => 'Bladder',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Muscle',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Testis',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Breast',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Brain',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Brain',
(int) 52 => 'Breast',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Adrenal',
(int) 56 => 'Testis',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Lung',
(int) 61 => 'Testis',
(int) 62 => 'Adrenal',
(int) 63 => 'Brain',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Bladder',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Ovary',
(int) 77 => 'Placenta',
(int) 78 => 'Testis',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Kidney',
(int) 87 => 'Liver',
(int) 88 => 'Lung',
(int) 89 => 'Muscle',
(int) 90 => 'Ovary',
(int) 91 => 'Testis',
(int) 92 => 'Heart',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Adrenal',
(int) 96 => 'Bladder',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Colon',
(int) 100 => 'Heart',
(int) 101 => 'Lung',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Colon',
(int) 106 => 'Liver',
(int) 107 => 'Lung',
(int) 108 => 'Muscle'
)
),
'CIL_0007MW_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000005917' => array(
[maximum depth reached]
),
'ENSMUSG00000020319' => array(
[maximum depth reached]
),
'ENSMUSG00000042302' => array(
[maximum depth reached]
),
'ENSMUSG00000082874' => array(
[maximum depth reached]
),
'ENSMUSG00000084004' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Colon',
(int) 13 => 'Ovary',
(int) 14 => 'Placenta',
(int) 15 => 'Testis',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Testis',
(int) 25 => 'Brain',
(int) 26 => 'Colon',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Bladder',
(int) 33 => 'Liver',
(int) 34 => 'Muscle',
(int) 35 => 'Testis',
(int) 36 => 'Breast',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Bladder',
(int) 41 => 'Brain',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Liver',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Adrenal',
(int) 55 => 'Bladder',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis'
)
),
'CIL_0007MW_0005' => array(
'genes_in_region' => array(
'ENSDARG00000043643' => array(
[maximum depth reached]
),
'ENSDARG00000074590' => array(
[maximum depth reached]
),
'ENSDARG00000094992' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Brain',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Muscle',
(int) 7 => 'Brain',
(int) 8 => 'Liver',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Brain',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MW_0004',
'tax_id' => '7955',
'chromosome' => '1',
'seq_start' => '51416749',
'seq_end' => '51416920',
'region_length' => '171',
'region_type' => 'UCNEbase',
'el_id' => 'OTX1'
)
)
$gene_el = array(
'ENSMUST00000117561' => array(
'Adipose' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.06'
),
'Adrenal' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.013',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.091',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.194',
'stddev_FPKM' => '0.14'
),
'Kidney' => array(
'average_FPKM' => '0.043',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.011',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.052',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.121',
'stddev_FPKM' => '0.09'
),
'Placenta' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.02'
),
'Testis' => array(
'average_FPKM' => '0.034',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000084004'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.06'
),
'Adrenal' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.013',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.091',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.194',
'stddev_FPKM' => '0.14'
),
'Kidney' => array(
'average_FPKM' => '0.043',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.011',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.052',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.121',
'stddev_FPKM' => '0.09'
),
'Placenta' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.02'
),
'Testis' => array(
'average_FPKM' => '0.034',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000117561'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007MW_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MW_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MW_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000115504' => 'EH domain binding protein 1',
'ENSG00000115507' => 'orthodenticle homeobox 1',
'ENSG00000143951' => 'WD repeat containing planar cell polarity effector',
'ENSG00000226605' => null,
'ENSG00000231609' => null,
'ENSG00000232403' => null,
'ENSG00000233716' => null,
'ENSG00000237162' => null,
'ENSG00000242412' => 'diazepam binding inhibitor-like 5 pseudogene 2',
'ENSG00000270437' => null,
'ENSG00000276843' => 'Metazoan signal recognition particle RNA',
'ENSMUSG00000005917' => 'orthodenticle homolog 1',
'ENSMUSG00000020319' => 'WD repeat containing planar cell polarity effector',
'ENSMUSG00000042302' => 'EH domain binding protein 1',
'ENSMUSG00000082874' => 'ribosomal protein L15, pseudogene 1',
'ENSMUSG00000084004' => 'predicted gene 12047',
'ENSDARG00000043643' => 'EH domain binding protein 1',
'ENSDARG00000074590' => 'WD repeat containing planar cell polarity effector',
'ENSDARG00000094992' => 'orthodenticle homolog 1b',
'ENSDARG00000097512' => 'si:dkeyp-74f1.2'
),
'gene_name_arr' => array(
'ENSG00000115504' => 'EHBP1',
'ENSG00000115507' => 'OTX1',
'ENSG00000143951' => 'WDPCP',
'ENSG00000226605' => 'AC007098.1',
'ENSG00000231609' => 'AC009501.4',
'ENSG00000232403' => 'RP11-511I11.1',
'ENSG00000233716' => 'AC074367.1',
'ENSG00000237162' => 'RP11-443F16.1',
'ENSG00000242412' => 'DBIL5P2',
'ENSG00000270437' => 'RP11-511I11.2',
'ENSG00000276843' => 'Metazoa_SRP',
'ENSMUSG00000005917' => 'Otx1',
'ENSMUSG00000020319' => 'Wdpcp',
'ENSMUSG00000042302' => 'Ehbp1',
'ENSMUSG00000082874' => 'Rpl15-ps1',
'ENSMUSG00000084004' => 'Gm12047',
'ENSDARG00000043643' => 'ehbp1',
'ENSDARG00000074590' => 'wdpcp',
'ENSDARG00000094992' => 'otx1b',
'ENSDARG00000097512' => 'si:dkeyp-74f1.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 26 => 'Brain',
(int) 48 => 'Breast',
(int) 60 => 'Colon',
(int) 73 => 'Heart',
(int) 86 => 'Kidney',
(int) 100 => 'Liver',
(int) 117 => 'Lung',
(int) 130 => 'Muscle',
(int) 139 => 'Ovary',
(int) 155 => 'Placenta',
(int) 169 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 82,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000263991' => array(
'start' => '62705866',
'end' => '63046487',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-001'
),
'ENST00000405015' => array(
'start' => '62673851',
'end' => '63045597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-002'
),
'ENST00000405289' => array(
'start' => '62707192',
'end' => '63045500',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-007'
),
'ENST00000405482' => array(
'start' => '62705652',
'end' => '62864904',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-005'
),
'ENST00000413434' => array(
'start' => '62673878',
'end' => '62826195',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-014'
),
'ENST00000422032' => array(
'start' => '62955615',
'end' => '62993976',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-017'
),
'ENST00000426940' => array(
'start' => '62673878',
'end' => '62826258',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-010'
),
'ENST00000427809' => array(
'start' => '62705652',
'end' => '62764336',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-011'
),
'ENST00000431489' => array(
'start' => '62705742',
'end' => '63046487',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-003'
),
'ENST00000444311' => array(
'start' => '62948292',
'end' => '62988004',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-016'
),
'ENST00000449820' => array(
'start' => '62673878',
'end' => '62858416',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-013'
),
'ENST00000454124' => array(
'start' => '62948933',
'end' => '62979286',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-015'
),
'ENST00000462441' => array(
'start' => '62872038',
'end' => '62881777',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'EHBP1-021'
),
'ENST00000467436' => array(
'start' => '62706313',
'end' => '62706992',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'EHBP1-012'
),
'ENST00000469591' => array(
'start' => '62942718',
'end' => '62956117',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-020'
),
'ENST00000471179' => array(
'start' => '63044839',
'end' => '63045655',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-019'
),
'ENST00000472809' => array(
'start' => '62705712',
'end' => '62772134',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-006'
),
'ENST00000491965' => array(
'start' => '62979323',
'end' => '62994177',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-018'
),
'ENST00000494958' => array(
'start' => '62705712',
'end' => '62826581',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-004'
),
'ENST00000496857' => array(
'start' => '62964962',
'end' => '63045663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'EHBP1-009'
),
'ENST00000282549' => array(
'start' => '63050802',
'end' => '63057836',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OTX1-001'
),
'ENST00000366671' => array(
'start' => '63050057',
'end' => '63057836',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OTX1-002'
),
'ENST00000405984' => array(
'start' => '63050831',
'end' => '63056583',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OTX1-005'
),
'ENST00000476383' => array(
'start' => '63050851',
'end' => '63052207',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'OTX1-006'
),
'ENST00000477348' => array(
'start' => '63050830',
'end' => '63051804',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'OTX1-004'
),
'ENST00000484066' => array(
'start' => '63050741',
'end' => '63053546',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'OTX1-003'
),
'ENST00000272321' => array(
'start' => '63121383',
'end' => '63588799',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-002'
),
'ENST00000398544' => array(
'start' => '63121831',
'end' => '63438007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-007'
),
'ENST00000409120' => array(
'start' => '63121814',
'end' => '63443230',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-001'
),
'ENST00000409199' => array(
'start' => '63121402',
'end' => '63477934',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-008'
),
'ENST00000409354' => array(
'start' => '63121383',
'end' => '63433930',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WDPCP-009'
),
'ENST00000409562' => array(
'start' => '63228388',
'end' => '63588518',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-005'
),
'ENST00000409835' => array(
'start' => '63359795',
'end' => '63588518',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-004'
),
'ENST00000417238' => array(
'start' => '63368823',
'end' => '63588518',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WDPCP-003'
),
'ENST00000418148' => array(
'start' => '63437457',
'end' => '63588266',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WDPCP-012'
),
'ENST00000431065' => array(
'start' => '63484942',
'end' => '63588799',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-011'
),
'ENST00000462652' => array(
'start' => '63377849',
'end' => '63382074',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'WDPCP-014'
),
'ENST00000467687' => array(
'start' => '63487472',
'end' => '63827843',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-017'
),
'ENST00000473678' => array(
'start' => '63437453',
'end' => '63441043',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-013'
),
'ENST00000484073' => array(
'start' => '63564175',
'end' => '63588500',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-010'
),
'ENST00000487280' => array(
'start' => '63121734',
'end' => '63153114',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'WDPCP-015'
),
'ENST00000490935' => array(
'start' => '63484604',
'end' => '63827843',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-016'
),
'ENST00000493315' => array(
'start' => '63403709',
'end' => '63484689',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'WDPCP-006'
),
'ENST00000452397' => array(
'start' => '62826064',
'end' => '62858438',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC007098.1-001'
),
'ENST00000412297' => array(
'start' => '63045176',
'end' => '63046609',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-004'
),
'ENST00000413549' => array(
'start' => '63045311',
'end' => '63048521',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-003'
),
'ENST00000429952' => array(
'start' => '63043922',
'end' => '63047711',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-001'
),
'ENST00000437346' => array(
'start' => '63045061',
'end' => '63048640',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-002'
),
'ENST00000428700' => array(
'start' => '63108118',
'end' => '63108429',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-511I11.1-001'
),
'ENST00000438685' => array(
'start' => '63232453',
'end' => '63233577',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC074367.1-001'
),
'ENST00000420122' => array(
'start' => '62939916',
'end' => '62940282',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-443F16.1-001'
),
'ENST00000443827' => array(
'start' => '63119011',
'end' => '63119263',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'DBIL5P2-001'
),
'ENST00000491724' => array(
'start' => '63117851',
'end' => '63119542',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DBIL5P2-002'
),
'ENST00000605001' => array(
'start' => '63083008',
'end' => '63087322',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-511I11.2-001'
),
'ENST00000611643' => array(
'start' => '63168600',
'end' => '63168847',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-395'
),
'ENSMUST00000006071' => array(
'start' => '21994764',
'end' => '22001615',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Otx1-001'
),
'ENSMUST00000147486' => array(
'start' => '21996858',
'end' => '22002897',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Otx1-003'
),
'ENSMUST00000172395' => array(
'start' => '21994769',
'end' => '22001710',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Otx1-002'
),
'ENSMUST00000020568' => array(
'start' => '21572235',
'end' => '21898989',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wdpcp-002'
),
'ENSMUST00000128794' => array(
'start' => '21813399',
'end' => '21817341',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-003'
),
'ENSMUST00000131135' => array(
'start' => '21572235',
'end' => '21664385',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wdpcp-005'
),
'ENSMUST00000143608' => array(
'start' => '21689583',
'end' => '21711910',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-006'
),
'ENSMUST00000149757' => array(
'start' => '21572305',
'end' => '21697568',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-004'
),
'ENSMUST00000156624' => array(
'start' => '21695129',
'end' => '21749350',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-001'
),
'ENSMUST00000045167' => array(
'start' => '22005828',
'end' => '22285838',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-001'
),
'ENSMUST00000109563' => array(
'start' => '22005828',
'end' => '22286795',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-201'
),
'ENSMUST00000134293' => array(
'start' => '22146532',
'end' => '22285872',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-002'
),
'ENSMUST00000136762' => array(
'start' => '22169037',
'end' => '22171410',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ehbp1-005'
),
'ENSMUST00000137594' => array(
'start' => '22232002',
'end' => '22342292',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ehbp1-003'
),
'ENSMUST00000152372' => array(
'start' => '22110353',
'end' => '22173006',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ehbp1-004'
),
'ENSMUST00000180360' => array(
'start' => '22005828',
'end' => '22286795',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-202'
),
'ENSMUST00000120694' => array(
'start' => '21953140',
'end' => '21953703',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl15-ps1-001'
),
'ENSMUST00000117561' => array(
'start' => '21877007',
'end' => '21877950',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm12047-001'
),
'ENSDART00000064067' => array(
'start' => '23939549',
'end' => '24152448',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ehbp1-201'
),
'ENSDART00000155191' => array(
'start' => '24104942',
'end' => '24132574',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ehbp1-002'
),
'ENSDART00000156251' => array(
'start' => '23937169',
'end' => '24143472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ehbp1-001'
),
'ENSDART00000112665' => array(
'start' => '24159122',
'end' => '24236178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wdpcp-201'
),
'ENSDART00000155020' => array(
'start' => '24159205',
'end' => '24267829',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wdpcp-001'
),
'ENSDART00000155192' => array(
'start' => '24177722',
'end' => '24192684',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wdpcp-002'
),
'ENSDART00000064083' => array(
'start' => '24146910',
'end' => '24152572',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'otx1b-001'
),
'ENSDART00000155255' => array(
'start' => '24138108',
'end' => '24145560',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:dkeyp-74f1.2-002'
),
'ENSDART00000156293' => array(
'start' => '24141701',
'end' => '24146678',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:dkeyp-74f1.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007MW_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MW_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MW_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007MW_0001' => array(
'genes_in_region' => array(
'ENSG00000115504' => array(
[maximum depth reached]
),
'ENSG00000115507' => array(
[maximum depth reached]
),
'ENSG00000232403' => array(
[maximum depth reached]
),
'ENSG00000233716' => array(
[maximum depth reached]
),
'ENSG00000237162' => array(
[maximum depth reached]
),
'ENSG00000242412' => array(
[maximum depth reached]
),
'ENSG00000276843' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Testis',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Lung',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 19 => 'Bladder',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Muscle',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Testis',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Breast',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Brain',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Brain',
(int) 52 => 'Breast',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Adrenal',
(int) 56 => 'Testis',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Lung',
(int) 61 => 'Testis',
(int) 62 => 'Adrenal',
(int) 63 => 'Brain',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Bladder',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Ovary',
(int) 77 => 'Placenta',
(int) 78 => 'Testis',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Kidney',
(int) 87 => 'Liver',
(int) 88 => 'Lung',
(int) 89 => 'Muscle',
(int) 90 => 'Ovary',
(int) 91 => 'Testis',
(int) 92 => 'Heart',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Adrenal',
(int) 96 => 'Bladder',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Colon',
(int) 100 => 'Heart',
(int) 101 => 'Lung',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Colon',
(int) 106 => 'Liver',
(int) 107 => 'Lung',
(int) 108 => 'Muscle'
)
),
'CIL_0007MW_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000005917' => array(
[maximum depth reached]
),
'ENSMUSG00000020319' => array(
[maximum depth reached]
),
'ENSMUSG00000042302' => array(
[maximum depth reached]
),
'ENSMUSG00000082874' => array(
[maximum depth reached]
),
'ENSMUSG00000084004' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Colon',
(int) 13 => 'Ovary',
(int) 14 => 'Placenta',
(int) 15 => 'Testis',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Testis',
(int) 25 => 'Brain',
(int) 26 => 'Colon',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Bladder',
(int) 33 => 'Liver',
(int) 34 => 'Muscle',
(int) 35 => 'Testis',
(int) 36 => 'Breast',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Bladder',
(int) 41 => 'Brain',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Liver',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Adrenal',
(int) 55 => 'Bladder',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis'
)
),
'CIL_0007MW_0005' => array(
'genes_in_region' => array(
'ENSDARG00000043643' => array(
[maximum depth reached]
),
'ENSDARG00000074590' => array(
[maximum depth reached]
),
'ENSDARG00000094992' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Brain',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Muscle',
(int) 7 => 'Brain',
(int) 8 => 'Liver',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Brain',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000115504' => 'EH domain binding protein 1',
'ENSG00000115507' => 'orthodenticle homeobox 1',
'ENSG00000143951' => 'WD repeat containing planar cell polarity effector',
'ENSG00000226605' => null,
'ENSG00000231609' => null,
'ENSG00000232403' => null,
'ENSG00000233716' => null,
'ENSG00000237162' => null,
'ENSG00000242412' => 'diazepam binding inhibitor-like 5 pseudogene 2',
'ENSG00000270437' => null,
'ENSG00000276843' => 'Metazoan signal recognition particle RNA',
'ENSMUSG00000005917' => 'orthodenticle homolog 1',
'ENSMUSG00000020319' => 'WD repeat containing planar cell polarity effector',
'ENSMUSG00000042302' => 'EH domain binding protein 1',
'ENSMUSG00000082874' => 'ribosomal protein L15, pseudogene 1',
'ENSMUSG00000084004' => 'predicted gene 12047',
'ENSDARG00000043643' => 'EH domain binding protein 1',
'ENSDARG00000074590' => 'WD repeat containing planar cell polarity effector',
'ENSDARG00000094992' => 'orthodenticle homolog 1b',
'ENSDARG00000097512' => 'si:dkeyp-74f1.2'
)
$gene_name_arr = array(
'ENSG00000115504' => 'EHBP1',
'ENSG00000115507' => 'OTX1',
'ENSG00000143951' => 'WDPCP',
'ENSG00000226605' => 'AC007098.1',
'ENSG00000231609' => 'AC009501.4',
'ENSG00000232403' => 'RP11-511I11.1',
'ENSG00000233716' => 'AC074367.1',
'ENSG00000237162' => 'RP11-443F16.1',
'ENSG00000242412' => 'DBIL5P2',
'ENSG00000270437' => 'RP11-511I11.2',
'ENSG00000276843' => 'Metazoa_SRP',
'ENSMUSG00000005917' => 'Otx1',
'ENSMUSG00000020319' => 'Wdpcp',
'ENSMUSG00000042302' => 'Ehbp1',
'ENSMUSG00000082874' => 'Rpl15-ps1',
'ENSMUSG00000084004' => 'Gm12047',
'ENSDARG00000043643' => 'ehbp1',
'ENSDARG00000074590' => 'wdpcp',
'ENSDARG00000094992' => 'otx1b',
'ENSDARG00000097512' => 'si:dkeyp-74f1.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MW_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '62787578',
'seq_end' => '63424747',
'region_length' => '637169',
'region_type' => 'UCNEbase',
'el_id' => 'OTX1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MW_0002',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '63424748',
'seq_end' => '63435010',
'region_length' => '10262',
'region_type' => 'UCNEbase',
'el_id' => 'OTX1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MW_0003',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '21694041',
'seq_end' => '22206768',
'region_length' => '512727',
'region_type' => 'UCNEbase',
'el_id' => 'OTX1'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MW_0004',
'tax_id' => '7955',
'chromosome' => '1',
'seq_start' => '51416749',
'seq_end' => '51416920',
'region_length' => '171',
'region_type' => 'UCNEbase',
'el_id' => 'OTX1'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MW_0005',
'tax_id' => '7955',
'chromosome' => '17',
'seq_start' => '24068085',
'seq_end' => '24218460',
'region_length' => '150375',
'region_type' => 'UCNEbase',
'el_id' => 'OTX1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 26 => 'Brain',
(int) 48 => 'Breast',
(int) 60 => 'Colon',
(int) 73 => 'Heart',
(int) 86 => 'Kidney',
(int) 100 => 'Liver',
(int) 117 => 'Lung',
(int) 130 => 'Muscle',
(int) 139 => 'Ovary',
(int) 155 => 'Placenta',
(int) 169 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 82
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000263991' => array(
'start' => '62705866',
'end' => '63046487',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-001'
),
'ENST00000405015' => array(
'start' => '62673851',
'end' => '63045597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-002'
),
'ENST00000405289' => array(
'start' => '62707192',
'end' => '63045500',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-007'
),
'ENST00000405482' => array(
'start' => '62705652',
'end' => '62864904',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-005'
),
'ENST00000413434' => array(
'start' => '62673878',
'end' => '62826195',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-014'
),
'ENST00000422032' => array(
'start' => '62955615',
'end' => '62993976',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-017'
),
'ENST00000426940' => array(
'start' => '62673878',
'end' => '62826258',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-010'
),
'ENST00000427809' => array(
'start' => '62705652',
'end' => '62764336',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-011'
),
'ENST00000431489' => array(
'start' => '62705742',
'end' => '63046487',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-003'
),
'ENST00000444311' => array(
'start' => '62948292',
'end' => '62988004',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-016'
),
'ENST00000449820' => array(
'start' => '62673878',
'end' => '62858416',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-013'
),
'ENST00000454124' => array(
'start' => '62948933',
'end' => '62979286',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EHBP1-015'
),
'ENST00000462441' => array(
'start' => '62872038',
'end' => '62881777',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'EHBP1-021'
),
'ENST00000467436' => array(
'start' => '62706313',
'end' => '62706992',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'EHBP1-012'
),
'ENST00000469591' => array(
'start' => '62942718',
'end' => '62956117',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-020'
),
'ENST00000471179' => array(
'start' => '63044839',
'end' => '63045655',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-019'
),
'ENST00000472809' => array(
'start' => '62705712',
'end' => '62772134',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-006'
),
'ENST00000491965' => array(
'start' => '62979323',
'end' => '62994177',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-018'
),
'ENST00000494958' => array(
'start' => '62705712',
'end' => '62826581',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'EHBP1-004'
),
'ENST00000496857' => array(
'start' => '62964962',
'end' => '63045663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'EHBP1-009'
),
'ENST00000282549' => array(
'start' => '63050802',
'end' => '63057836',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OTX1-001'
),
'ENST00000366671' => array(
'start' => '63050057',
'end' => '63057836',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OTX1-002'
),
'ENST00000405984' => array(
'start' => '63050831',
'end' => '63056583',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OTX1-005'
),
'ENST00000476383' => array(
'start' => '63050851',
'end' => '63052207',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'OTX1-006'
),
'ENST00000477348' => array(
'start' => '63050830',
'end' => '63051804',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'OTX1-004'
),
'ENST00000484066' => array(
'start' => '63050741',
'end' => '63053546',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'OTX1-003'
),
'ENST00000272321' => array(
'start' => '63121383',
'end' => '63588799',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-002'
),
'ENST00000398544' => array(
'start' => '63121831',
'end' => '63438007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-007'
),
'ENST00000409120' => array(
'start' => '63121814',
'end' => '63443230',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-001'
),
'ENST00000409199' => array(
'start' => '63121402',
'end' => '63477934',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-008'
),
'ENST00000409354' => array(
'start' => '63121383',
'end' => '63433930',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WDPCP-009'
),
'ENST00000409562' => array(
'start' => '63228388',
'end' => '63588518',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-005'
),
'ENST00000409835' => array(
'start' => '63359795',
'end' => '63588518',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-004'
),
'ENST00000417238' => array(
'start' => '63368823',
'end' => '63588518',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WDPCP-003'
),
'ENST00000418148' => array(
'start' => '63437457',
'end' => '63588266',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WDPCP-012'
),
'ENST00000431065' => array(
'start' => '63484942',
'end' => '63588799',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-011'
),
'ENST00000462652' => array(
'start' => '63377849',
'end' => '63382074',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'WDPCP-014'
),
'ENST00000467687' => array(
'start' => '63487472',
'end' => '63827843',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-017'
),
'ENST00000473678' => array(
'start' => '63437453',
'end' => '63441043',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WDPCP-013'
),
'ENST00000484073' => array(
'start' => '63564175',
'end' => '63588500',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-010'
),
'ENST00000487280' => array(
'start' => '63121734',
'end' => '63153114',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'WDPCP-015'
),
'ENST00000490935' => array(
'start' => '63484604',
'end' => '63827843',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WDPCP-016'
),
'ENST00000493315' => array(
'start' => '63403709',
'end' => '63484689',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'WDPCP-006'
),
'ENST00000452397' => array(
'start' => '62826064',
'end' => '62858438',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC007098.1-001'
),
'ENST00000412297' => array(
'start' => '63045176',
'end' => '63046609',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-004'
),
'ENST00000413549' => array(
'start' => '63045311',
'end' => '63048521',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-003'
),
'ENST00000429952' => array(
'start' => '63043922',
'end' => '63047711',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-001'
),
'ENST00000437346' => array(
'start' => '63045061',
'end' => '63048640',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC009501.4-002'
),
'ENST00000428700' => array(
'start' => '63108118',
'end' => '63108429',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-511I11.1-001'
),
'ENST00000438685' => array(
'start' => '63232453',
'end' => '63233577',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC074367.1-001'
),
'ENST00000420122' => array(
'start' => '62939916',
'end' => '62940282',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-443F16.1-001'
),
'ENST00000443827' => array(
'start' => '63119011',
'end' => '63119263',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'DBIL5P2-001'
),
'ENST00000491724' => array(
'start' => '63117851',
'end' => '63119542',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DBIL5P2-002'
),
'ENST00000605001' => array(
'start' => '63083008',
'end' => '63087322',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-511I11.2-001'
),
'ENST00000611643' => array(
'start' => '63168600',
'end' => '63168847',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-395'
),
'ENSMUST00000006071' => array(
'start' => '21994764',
'end' => '22001615',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Otx1-001'
),
'ENSMUST00000147486' => array(
'start' => '21996858',
'end' => '22002897',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Otx1-003'
),
'ENSMUST00000172395' => array(
'start' => '21994769',
'end' => '22001710',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Otx1-002'
),
'ENSMUST00000020568' => array(
'start' => '21572235',
'end' => '21898989',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wdpcp-002'
),
'ENSMUST00000128794' => array(
'start' => '21813399',
'end' => '21817341',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-003'
),
'ENSMUST00000131135' => array(
'start' => '21572235',
'end' => '21664385',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wdpcp-005'
),
'ENSMUST00000143608' => array(
'start' => '21689583',
'end' => '21711910',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-006'
),
'ENSMUST00000149757' => array(
'start' => '21572305',
'end' => '21697568',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-004'
),
'ENSMUST00000156624' => array(
'start' => '21695129',
'end' => '21749350',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wdpcp-001'
),
'ENSMUST00000045167' => array(
'start' => '22005828',
'end' => '22285838',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-001'
),
'ENSMUST00000109563' => array(
'start' => '22005828',
'end' => '22286795',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-201'
),
'ENSMUST00000134293' => array(
'start' => '22146532',
'end' => '22285872',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-002'
),
'ENSMUST00000136762' => array(
'start' => '22169037',
'end' => '22171410',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ehbp1-005'
),
'ENSMUST00000137594' => array(
'start' => '22232002',
'end' => '22342292',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ehbp1-003'
),
'ENSMUST00000152372' => array(
'start' => '22110353',
'end' => '22173006',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ehbp1-004'
),
'ENSMUST00000180360' => array(
'start' => '22005828',
'end' => '22286795',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ehbp1-202'
),
'ENSMUST00000120694' => array(
'start' => '21953140',
'end' => '21953703',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl15-ps1-001'
),
'ENSMUST00000117561' => array(
'start' => '21877007',
'end' => '21877950',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm12047-001'
),
'ENSDART00000064067' => array(
'start' => '23939549',
'end' => '24152448',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ehbp1-201'
),
'ENSDART00000155191' => array(
'start' => '24104942',
'end' => '24132574',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ehbp1-002'
),
'ENSDART00000156251' => array(
'start' => '23937169',
'end' => '24143472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ehbp1-001'
),
'ENSDART00000112665' => array(
'start' => '24159122',
'end' => '24236178',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wdpcp-201'
),
'ENSDART00000155020' => array(
'start' => '24159205',
'end' => '24267829',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wdpcp-001'
),
'ENSDART00000155192' => array(
'start' => '24177722',
'end' => '24192684',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wdpcp-002'
),
'ENSDART00000064083' => array(
'start' => '24146910',
'end' => '24152572',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'otx1b-001'
),
'ENSDART00000155255' => array(
'start' => '24138108',
'end' => '24145560',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:dkeyp-74f1.2-002'
),
'ENSDART00000156293' => array(
'start' => '24141701',
'end' => '24146678',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:dkeyp-74f1.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007MW_0001' => array(
'genes_in_region' => array(
'ENSG00000115504' => array(
[maximum depth reached]
),
'ENSG00000115507' => array(
[maximum depth reached]
),
'ENSG00000232403' => array(
[maximum depth reached]
),
'ENSG00000233716' => array(
[maximum depth reached]
),
'ENSG00000237162' => array(
[maximum depth reached]
),
'ENSG00000242412' => array(
[maximum depth reached]
),
'ENSG00000276843' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Ovary',
(int) 2 => 'Testis',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Lung',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 19 => 'Bladder',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Muscle',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Testis',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Heart',
(int) 34 => 'Kidney',
(int) 35 => 'Liver',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Breast',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Brain',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Brain',
(int) 52 => 'Breast',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Adrenal',
(int) 56 => 'Testis',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Lung',
(int) 61 => 'Testis',
(int) 62 => 'Adrenal',
(int) 63 => 'Brain',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Bladder',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Ovary',
(int) 77 => 'Placenta',
(int) 78 => 'Testis',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Kidney',
(int) 87 => 'Liver',
(int) 88 => 'Lung',
(int) 89 => 'Muscle',
(int) 90 => 'Ovary',
(int) 91 => 'Testis',
(int) 92 => 'Heart',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Adrenal',
(int) 96 => 'Bladder',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Colon',
(int) 100 => 'Heart',
(int) 101 => 'Lung',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Colon',
(int) 106 => 'Liver',
(int) 107 => 'Lung',
(int) 108 => 'Muscle'
)
),
'CIL_0007MW_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000005917' => array(
[maximum depth reached]
),
'ENSMUSG00000020319' => array(
[maximum depth reached]
),
'ENSMUSG00000042302' => array(
[maximum depth reached]
),
'ENSMUSG00000082874' => array(
[maximum depth reached]
),
'ENSMUSG00000084004' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Colon',
(int) 13 => 'Ovary',
(int) 14 => 'Placenta',
(int) 15 => 'Testis',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Testis',
(int) 25 => 'Brain',
(int) 26 => 'Colon',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Bladder',
(int) 33 => 'Liver',
(int) 34 => 'Muscle',
(int) 35 => 'Testis',
(int) 36 => 'Breast',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Bladder',
(int) 41 => 'Brain',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Liver',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Adrenal',
(int) 55 => 'Bladder',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis'
)
),
'CIL_0007MW_0005' => array(
'genes_in_region' => array(
'ENSDARG00000043643' => array(
[maximum depth reached]
),
'ENSDARG00000074590' => array(
[maximum depth reached]
),
'ENSDARG00000094992' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Brain',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Muscle',
(int) 7 => 'Brain',
(int) 8 => 'Liver',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Muscle',
(int) 13 => 'Brain',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MW_0004',
'tax_id' => '7955',
'chromosome' => '1',
'seq_start' => '51416749',
'seq_end' => '51416920',
'region_length' => '171',
'region_type' => 'UCNEbase',
'el_id' => 'OTX1'
)
)
$gene_el = array(
'ENSMUST00000117561' => array(
'Adipose' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.06'
),
'Adrenal' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.013',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.091',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.194',
'stddev_FPKM' => '0.14'
),
'Kidney' => array(
'average_FPKM' => '0.043',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.011',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.052',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.121',
'stddev_FPKM' => '0.09'
),
'Placenta' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.02'
),
'Testis' => array(
'average_FPKM' => '0.034',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000084004'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.06'
),
'Adrenal' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.013',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.091',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.194',
'stddev_FPKM' => '0.14'
),
'Kidney' => array(
'average_FPKM' => '0.043',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.011',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.052',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.121',
'stddev_FPKM' => '0.09'
),
'Placenta' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.02'
),
'Testis' => array(
'average_FPKM' => '0.034',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000117561'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(EHBP1)