C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420995 TRIM13-001 ENSG00000204977 9606 + 13:49997019-50014331 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENST00000420995
Transcript ID Liver
ENST00000420995 4.455±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PF CIL_0004PF_0002 CGP 13:49912706-50020481
CIL_0000UW CIL_0000UW_0001 CGP 13:49995888-50020922

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0004871 IMP signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005789 IDA endoplasmic reticulum membrane
GO:0007165 IMP signal transduction
GO:0008270 IEA zinc ion binding
GO:0009653 TAS anatomical structure morphogenesis
GO:0010332 IEP response to gamma radiation
GO:0010942 IDA positive regulation of cell death
GO:0016021 IEA integral component of membrane
GO:0016239 IDA positive regulation of macroautophagy
GO:0016874 IEA ligase activity
GO:0030433 IDA ER-associated ubiquitin-dependent protein catabolic process
GO:0032897 IDA negative regulation of viral transcription
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045087 IDA innate immune response
GO:0046872 IEA metal ion binding
GO:0051092 IMP positive regulation of NF-kappaB transcription factor activity
GO:0051865 IDA protein autoubiquitination
GO:0097038 IDA perinuclear endoplasmic reticulum
GO:1902187 IDA negative regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039562 Trim13-201 protein_coding Mus_musculus 0 1380
ENSMUST00000165015 Trim13-202 protein_coding Mus_musculus 0 1380
ENSMUST00000163721 Gm9359-001 processed_pseudogene Mus_musculus 0 1199
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00005 55

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