C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: RAB5A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422242 RAB5A-003 ENSG00000144566 9606 + 3:19947405-19984450 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VJ CIL_0002VJ_0002 CGP 3:19879472-19985175
CIL_0004HT CIL_0004HT_0001 CGP 3:19947079-20012330

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IDA:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005768 ISS endosome
GO:0005769 IDA early endosome
GO:0005829 IDA cytosol
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006897 IDA endocytosis
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007399 IEA nervous system development
GO:0007596 TAS blood coagulation
GO:0008021 ISS synaptic vesicle
GO:0010008 TAS endosome membrane
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019003 IDA GDP binding
GO:0030154 IEA cell differentiation
GO:0030424 ISS axon
GO:0030425 ISS dendrite
GO:0036465 IDA synaptic vesicle recycling
GO:0036477 IDA somatodendritic compartment
GO:0043025 ISS neuronal cell body
GO:0043195 IDA terminal bouton
GO:0043679 ISS axon terminus
GO:0045022 IMP early endosome to late endosome transport
GO:0045921 IMP positive regulation of exocytosis
GO:0051036 IMP regulation of endosome size
GO:0051489 IDA regulation of filopodium assembly
GO:0070062 IDA extracellular vesicular exosome
GO:0098559 IMP cytoplasmic side of early endosome membrane
GO:2000286 IMP receptor internalization involved in canonical Wnt signaling pathway
GO:2000300 IMP regulation of synaptic vesicle exocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017975 Rab5a-201 protein_coding Mus_musculus 0 658
ENSMUST00000122122 Gm12045-001 processed_pseudogene Mus_musculus 0 292

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