C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002VJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069703-ENSDARG00000007257 CGP 7955 16:53033914-53065412
GeneTranscriptPositionBiotype
ENSDARG00000007257 (rab5ab)
RAB5A, member RAS oncogene family, b 		ENSDART00000015694 (rab5ab-001) 53051408-53065412 protein_coding
ENSDART00000132547 (rab5ab-002) 53051432-53065197 protein_coding
ENSDARG00000069703 (efhb)
EF-hand domain family, member B 		ENSDART00000101629 (efhb-201) 53033914-53050550 protein_coding
CIL_0002VJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163576-ENSG00000144566 CGP 9606 3:19879472-19985175
GeneTranscriptPositionBiotype
ENSG00000144566 (RAB5A)
RAB5A, member RAS oncogene family 		ENST00000273047 (RAB5A-001) 19947079-19985175 protein_coding
ENST00000412966 (RAB5A-008) 19947379-19976103 nonsense_mediated_decay
ENST00000422242 (RAB5A-003) 19947405-19984450 protein_coding
ENST00000443878 (RAB5A-005) 19947250-19950944 protein_coding
ENST00000446547 (RAB5A-002) 19947399-19984147 nonsense_mediated_decay
ENST00000469122 (RAB5A-011) 19951001-19978891 retained_intron
ENST00000473608 (RAB5A-010) 19975516-19984121 retained_intron
ENST00000476544 (RAB5A-007) 19947410-19951225 retained_intron
ENSG00000163576 (EFHB)
EF-hand domain family, member B 		ENST00000295824 (EFHB-001) 19879472-19934180 protein_coding
ENST00000344838 (EFHB-002) 19879476-19947009 protein_coding
ENST00000389256 (EFHB-003) 19896541-19934224 protein_coding
ENST00000440022 (EFHB-006) 19898777-19933292 protein_coding
ENST00000467602 (EFHB-007) 19884362-19898824 processed_transcript
ENST00000474780 (EFHB-005) 19945914-19947025 processed_transcript
ENST00000498089 (EFHB-004) 19894491-19934214 processed_transcript
ENSG00000183977 (PP2D1)
protein phosphatase 2C-like domain containing 1 		ENST00000333083 (PP2D1-002) 19979961-20012267 nonsense_mediated_decay
ENST00000389050 (PP2D1-001) 19985380-20012330 protein_coding
ENST00000461033 (PP2D1-003) 20000975-20012257 retained_intron
ENSG00000232953 (HSPA8P18)
heat shock 70kDa protein 8 pseudogene 18 		ENST00000439846 (HSPA8P18-001) 19940269-19943310 processed_pseudogene
CIL_0002VJ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023931-ENSMUSG00000017831 CGP 10090 17:53398889-53507671
GeneTranscriptPositionBiotype
ENSMUSG00000017831 (Rab5a)
RAB5A, member RAS oncogene family 		ENSMUST00000017975 (Rab5a-201) 53479234-53507671 protein_coding
ENSMUSG00000023931 (Efhb)
EF hand domain family, member B 		ENSMUST00000024725 (Efhb-201) 53398889-53463321 protein_coding
ENSMUSG00000044957 (Pp2d1)
protein phosphatase 2C-like domain containing 1 		ENSMUST00000056198 (Pp2d1-201) 53507460-53539451 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002VJ_0001ENSDARG00000007257ENSDART00000015694ENSDART00000132547ENSDARG00000069703ENSDART00000101629CIL_0002VJ_0002ENSG00000144566ENST00000273047ENST00000412966ENST00000422242ENST00000443878ENST00000446547ENST00000469122ENST00000473608ENST00000476544ENSG00000163576ENST00000295824ENST00000344838ENST00000389256ENST00000440022ENST00000467602ENST00000474780ENST00000498089ENSG00000183977ENST00000333083ENST00000389050ENST00000461033ENSG00000232953ENST00000439846CIL_0002VJ_0003ENSMUSG00000017831ENSMUST00000017975ENSMUSG00000023931ENSMUST00000024725ENSMUSG00000044957ENSMUST00000056198
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002VJ_0001ENSDARG00000007257ENSDART00000015694ENSDART00000132547ENSDARG00000069703ENSDART00000101629CIL_0002VJ_0002ENSG00000144566ENST00000273047ENST00000446547ENST00000473608ENSG00000163576ENST00000295824ENST00000344838ENST00000389256ENST00000440022ENST00000467602ENST00000474780ENST00000498089ENSG00000183977ENST00000333083ENST00000389050ENSG00000232953ENST00000439846CIL_0002VJ_0003ENSMUSG00000017831ENSMUST00000017975ENSMUSG00000023931ENSMUST00000024725ENSMUSG00000044957ENSMUST00000056198
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000007257 ENSDART00000015694 N/A N/A N/A 3.467±0.00 N/A N/A 9.318±1.52 14.044±2.42 2.329±0.00 N/A 6.298±0.00 N/A N/A N/A
ENSDART00000132547 N/A N/A N/A N/A N/A N/A N/A N/A 0.948±0.00 N/A N/A N/A N/A N/A
ENSDARG00000069703 ENSDART00000101629 N/A N/A N/A 0.228±0.05 N/A N/A 0.094±0.00 1.062±0.00 0.025±0.00 N/A 0.189±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144566 ENST00000273047 16.856±0.00 10.778±0.00 4.472±0.00 20.362±11.70 9.909±6.76 7.526±6.31 8.655±6.69 10.849±7.98 7.244±2.01 12.597±10.80 4.908±4.50 8.207±4.07 22.313±2.85 11.577±3.47
ENST00000412966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446547 N/A N/A N/A N/A N/A N/A N/A N/A 2.322±0.00 N/A N/A N/A N/A N/A
ENST00000469122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473608 N/A N/A 4.968±0.00 10.836±0.00 N/A 4.041±0.00 N/A 7.653±0.00 5.186±0.00 4.545±0.00 1.750±0.00 N/A N/A N/A
ENST00000476544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163576 ENST00000295824 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A 1.531±0.00 N/A 5.626±1.74
ENST00000344838 N/A 0.420±0.00 0.100±0.00 1.075±0.69 N/A 0.077±0.00 0.110±0.00 N/A 0.047±0.00 0.286±0.00 N/A 0.111±0.00 0.095±0.06 N/A
ENST00000389256 N/A N/A N/A N/A N/A 0.092±0.00 N/A N/A N/A 0.717±0.00 N/A 0.033±0.00 N/A N/A
ENST00000440022 N/A N/A N/A 0.873±0.00 N/A N/A 0.193±0.00 N/A N/A 0.663±0.00 N/A 0.045±0.00 N/A N/A
ENST00000467602 N/A N/A N/A N/A N/A 0.349±0.00 N/A N/A N/A N/A N/A N/A 0.310±0.00 28.833±0.00
ENST00000474780 N/A N/A N/A N/A 0.634±0.00 N/A N/A N/A N/A N/A N/A 0.182±0.08 N/A N/A
ENST00000498089 0.051±0.00 0.142±0.00 N/A N/A N/A 0.032±0.00 N/A N/A 0.021±0.00 N/A 0.060±0.00 0.043±0.00 0.069±0.02 N/A
ENSG00000183977 ENST00000333083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.822±0.00
ENST00000389050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.200±3.16
ENST00000461033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232953 ENST00000439846 0.011±0.00 0.053±0.00 N/A 0.058±0.01 0.011±0.00 N/A 0.010±0.00 0.040±0.00 N/A N/A 0.010±0.00 0.042±0.03 N/A 0.049±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017831 ENSMUST00000017975 8.143±0.58 7.152±2.09 30.529±0.79 19.122±4.59 6.154±1.03 8.528±1.44 8.079±0.15 10.334±1.18 11.514±3.67 13.589±0.58 15.286±1.68 9.044±6.85 22.962±6.28 3.817±0.95
ENSMUSG00000023931 ENSMUST00000024725 0.064±0.00 0.059±0.02 0.109±0.07 0.639±0.00 0.109±0.08 0.223±0.15 0.040±0.02 0.025±0.01 0.018±0.01 0.242±0.12 0.014±0.00 0.883±0.52 0.067±0.04 15.757±7.03
ENSMUSG00000044957 ENSMUST00000056198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.028±2.11

Loading