C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004HT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144566-ENSG00000183977 CGP 9606 3:19947079-20012330
GeneTranscriptPositionBiotype
ENSG00000144566 (RAB5A)
RAB5A, member RAS oncogene family 		ENST00000273047 (RAB5A-001) 19947079-19985175 protein_coding
ENST00000412966 (RAB5A-008) 19947379-19976103 nonsense_mediated_decay
ENST00000422242 (RAB5A-003) 19947405-19984450 protein_coding
ENST00000443878 (RAB5A-005) 19947250-19950944 protein_coding
ENST00000446547 (RAB5A-002) 19947399-19984147 nonsense_mediated_decay
ENST00000469122 (RAB5A-011) 19951001-19978891 retained_intron
ENST00000473608 (RAB5A-010) 19975516-19984121 retained_intron
ENST00000476544 (RAB5A-007) 19947410-19951225 retained_intron
ENSG00000183977 (PP2D1)
protein phosphatase 2C-like domain containing 1 		ENST00000333083 (PP2D1-002) 19979961-20012267 nonsense_mediated_decay
ENST00000389050 (PP2D1-001) 19985380-20012330 protein_coding
ENST00000461033 (PP2D1-003) 20000975-20012257 retained_intron
ENSG00000230697 (AC097635.4)
 ENST00000449663 (AC097635.4-001) 20007852-20008247 processed_pseudogene
CIL_0004HT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000017831-ENSMUSG00000044957 CGP 10090 17:53479234-53539451
GeneTranscriptPositionBiotype
ENSMUSG00000017831 (Rab5a)
RAB5A, member RAS oncogene family 		ENSMUST00000017975 (Rab5a-201) 53479234-53507671 protein_coding
ENSMUSG00000044957 (Pp2d1)
protein phosphatase 2C-like domain containing 1 		ENSMUST00000056198 (Pp2d1-201) 53507460-53539451 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004HT_0001ENSG00000144566ENST00000273047ENST00000412966ENST00000422242ENST00000443878ENST00000446547ENST00000469122ENST00000473608ENST00000476544ENSG00000183977ENST00000333083ENST00000389050ENST00000461033ENSG00000230697ENST00000449663CIL_0004HT_0002ENSMUSG00000017831ENSMUST00000017975ENSMUSG00000044957ENSMUST00000056198
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004HT_0001ENSG00000144566ENST00000273047ENST00000446547ENST00000473608ENSG00000183977ENST00000333083ENST00000389050ENSG00000230697ENST00000449663CIL_0004HT_0002ENSMUSG00000017831ENSMUST00000017975ENSMUSG00000044957ENSMUST00000056198
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144566 ENST00000273047 16.856±0.00 10.778±0.00 4.472±0.00 20.362±11.70 9.909±6.76 7.526±6.31 8.655±6.69 10.849±7.98 7.244±2.01 12.597±10.80 4.908±4.50 8.207±4.07 22.313±2.85 11.577±3.47
ENST00000412966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446547 N/A N/A N/A N/A N/A N/A N/A N/A 2.322±0.00 N/A N/A N/A N/A N/A
ENST00000469122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473608 N/A N/A 4.968±0.00 10.836±0.00 N/A 4.041±0.00 N/A 7.653±0.00 5.186±0.00 4.545±0.00 1.750±0.00 N/A N/A N/A
ENST00000476544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183977 ENST00000333083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.822±0.00
ENST00000389050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.200±3.16
ENST00000461033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230697 ENST00000449663 N/A N/A 0.220±0.00 N/A N/A N/A N/A 0.219±0.00 N/A N/A N/A 0.088±0.00 N/A 0.876±0.37
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017831 ENSMUST00000017975 8.143±0.58 7.152±2.09 30.529±0.79 19.122±4.59 6.154±1.03 8.528±1.44 8.079±0.15 10.334±1.18 11.514±3.67 13.589±0.58 15.286±1.68 9.044±6.85 22.962±6.28 3.817±0.95
ENSMUSG00000044957 ENSMUST00000056198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.028±2.11

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