C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 2-hydroxyacyl-CoA lyase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422591 HACL1-004 ENSG00000131373 9606 - 3:15563358-15601569 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000422591
Transcript ID Adrenal Brain Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000422591 6.108±0.00 4.627±0.00 10.449±0.00 2.384±0.00 4.224±0.00 1.611±0.00 3.602±0.00 2.605±0.00 4.308±0.00 9.142±3.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AM CIL_0005AM_0001 CGP 3:15450133-15601831
CIL_0005AL CIL_0005AL_0001 CGP 3:15560704-15645822

Gene Ontology

GO IDEvidence TypeGO Description
GO:0030976 IEA thiamine pyrophosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167175 Hacl1-014 nonsense_mediated_decay Mus_musculus 0 1604
ENSMUST00000127204 Hacl1-005 protein_coding Mus_musculus 0 1136
ENSMUST00000165955 Hacl1-012 nonsense_mediated_decay Mus_musculus 0 1136
ENSMUST00000022437 Hacl1-001 protein_coding Mus_musculus 0 1136
ENSMUST00000156431 Hacl1-002 nonsense_mediated_decay Mus_musculus 0 1136
ENSMUST00000171414 Hacl1-013 nonsense_mediated_decay Mus_musculus 0 787
ENSMUST00000167066 Hacl1-011 protein_coding Mus_musculus 0 608
ENSMUST00000155210 Hacl1-007 retained_intron Mus_musculus 0 486
ENSMUST00000140078 Hacl1-003 processed_transcript Mus_musculus 0 291
ENSMUST00000156189 Hacl1-008 retained_intron Mus_musculus 0 268
ENSMUST00000134626 Hacl1-004 nonsense_mediated_decay Mus_musculus 0 226
ENSMUST00000139501 Hacl1-010 processed_transcript Mus_musculus 0 196
ENSMUST00000135751 Hacl1-009 retained_intron Mus_musculus 1.4013e-45 189

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