C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 2-hydroxyacyl-CoA lyase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022437 Hacl1-001 ENSMUSG00000021884 10090 - 14:31607226-31640964 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderKidneyLiverMuscleTestisENSMUST00000022437
Transcript ID Adipose Bladder Kidney Liver Muscle Testis
ENSMUST00000022437 6.096±0.00 3.431±0.01 15.962±2.89 51.849±37.75 1.161±0.19 2.409±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AJ CIL_0005AJ_0002 CGP 14:31495079-31591343
CIL_0005AM CIL_0005AM_0002 CGP 14:31523082-31641286
CIL_0005AL CIL_0005AL_0002 CGP 14:31552905-31668579

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0001561 ISS fatty acid alpha-oxidation
GO:0005102 IEA receptor binding
GO:0005777 TAS:ISS peroxisome
GO:0006629 IDA lipid metabolic process
GO:0016829 IDA lyase activity
GO:0016830 ISS carbon-carbon lyase activity
GO:0030976 ISS thiamine pyrophosphate binding
GO:0042802 IEA identical protein binding
GO:0048037 IEA cofactor binding
GO:0051259 IEA protein oligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321169 HACL1-001 protein_coding Homo_sapiens 0 1888
ENST00000383779 HACL1-006 nonsense_mediated_decay Homo_sapiens 0 845
ENST00000414979 HACL1-009 protein_coding Homo_sapiens 0 313
ENST00000417015 BTD-006 nonsense_mediated_decay Homo_sapiens 9e-16 88
ENST00000421993 HACL1-008 protein_coding Homo_sapiens 0 520
ENST00000422591 HACL1-004 nonsense_mediated_decay Homo_sapiens 0 1136
ENST00000427382 BTD-004 protein_coding Homo_sapiens 7e-17 92
ENST00000435217 HACL1-003 protein_coding Homo_sapiens 0 861
ENST00000451445 HACL1-002 protein_coding Homo_sapiens 0 1199
ENST00000456194 HACL1-005 protein_coding Homo_sapiens 0 1485
ENST00000457447 HACL1-007 protein_coding Homo_sapiens 0 651
ENST00000460907 HACL1-010 retained_intron Homo_sapiens 0 272
ENST00000469454 HACL1-012 retained_intron Homo_sapiens 1e-39 167
ENST00000472857 HACL1-011 retained_intron Homo_sapiens 0 224
ENST00000494021 BTD-005 processed_transcript Homo_sapiens 7e-17 92

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