C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Nanog homeobox pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424456 NANOGP5-001 ENSG00000231697 9606 + 9:100175178-100176054 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000424456
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000424456 0.016±0.00 0.118±0.00 1.085±0.00 0.196±0.13 0.740±0.71 1.172±0.00 0.277±0.25 0.521±0.00 0.797±0.00 0.627±0.00 0.102±0.00 0.471±0.52 0.146±0.00 0.257±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000229 CIL_000229_0002 CGP 9:99979179-100301000
CIL_00022A CIL_00022A_0002 CGP 9:100099256-100352939

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000012540 Nanog-001 protein_coding Mus_musculus 2e-38 163
ENSMUST00000112580 Nanog-002 protein_coding Mus_musculus 2e-38 163
ENSMUST00000112581 Nanog-003 protein_coding Mus_musculus 2e-38 163

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