C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000229_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000019008-ENSDARG00000002213 CGP 7955 16:29645439-29730941
GeneTranscriptPositionBiotype
ENSDARG00000002213 (invs)
inversin 		ENSDART00000015688 (invs-001) 29670788-29730941 protein_coding
ENSDARG00000019008 (erp44)
endoplasmic reticulum protein 44 		ENSDART00000027545 (erp44-001) 29645439-29670583 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000229_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000023318-ENSG00000119509 CGP 9606 9:99979179-100301000
GeneTranscriptPositionBiotype
ENSG00000023318 (ERP44)
endoplasmic reticulum protein 44 		ENST00000262455 (ERP44-001) 99979179-100099040 protein_coding
ENSG00000119509 (INVS)
inversin 		ENST00000262456 (INVS-001) 100099275-100300788 protein_coding
ENST00000262457 (INVS-005) 100099256-100301000 protein_coding
ENST00000374921 (INVS-006) 100099288-100130903 protein_coding
ENST00000460636 (INVS-002) 100104539-100240126 processed_transcript
ENST00000466647 (INVS-004) 100099303-100226213 processed_transcript
ENST00000480309 (INVS-007) 100099272-100102017 processed_transcript
ENST00000496467 (INVS-003) 100099261-100226234 processed_transcript
ENSG00000231697 (NANOGP5)
Nanog homeobox pseudogene 5 		ENST00000424456 (NANOGP5-001) 100175178-100176054 transcribed_processed_pseudogene
ENSG00000234709 (UPF3AP3)
UPF3A pseudogene 3 		ENST00000420996 (UPF3AP3-001) 99998301-99999069 transcribed_processed_pseudogene
ENSG00000238172 (RPS2P35)
ribosomal protein S2 pseudogene 35 		ENST00000443417 (RPS2P35-001) 100116755-100117651 processed_pseudogene
ENSG00000239908 (RN7SL75P)
RNA, 7SL, cytoplasmic 75, pseudogene 		ENST00000461926 (RN7SL75P-201) 100102559-100102839 misc_RNA
ENSG00000270995 (RP11-29B11.5)
 ENST00000603444 (RP11-29B11.5-001) 100120435-100120900 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_000229_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028343-ENSMUSG00000028344 CGP 10090 4:48193323-48431954
GeneTranscriptPositionBiotype
ENSMUSG00000028343 (Erp44)
endoplasmic reticulum protein 44 		ENSMUST00000030028 (Erp44-001) 48193323-48279558 protein_coding
ENSMUST00000132927 (Erp44-004) 48238249-48244474 processed_transcript
ENSMUST00000138743 (Erp44-002) 48194490-48197024 processed_transcript
ENSMUST00000148947 (Erp44-003) 48240892-48279452 processed_transcript
ENSMUSG00000028344 (Invs)
inversin 		ENSMUST00000030029 (Invs-001) 48279802-48431954 protein_coding
ENSMUST00000129480 (Invs-006) 48382188-48396314 processed_transcript
ENSMUST00000143433 (Invs-004) 48279826-48427351 nonsense_mediated_decay
ENSMUST00000149555 (Invs-003) 48279816-48287109 processed_transcript
ENSMUST00000151762 (Invs-002) 48279800-48281055 processed_transcript
ENSMUST00000156602 (Invs-005) 48279760-48309202 processed_transcript
ENSMUSG00000028345 (Tex10)
testis expressed gene 10 		ENSMUST00000030030 (Tex10-003) 48430858-48473459 protein_coding
ENSMUST00000132911 (Tex10-004) 48469209-48473343 retained_intron
ENSMUST00000138531 (Tex10-005) 48458169-48459303 retained_intron
ENSMUST00000155750 (Tex10-002) 48467707-48469996 processed_transcript
ENSMUST00000155905 (Tex10-001) 48430858-48468924 nonsense_mediated_decay
ENSMUST00000164866 (Tex10-201) 48430956-48473422 protein_coding
ENSMUSG00000081953 (Gm12435)
predicted gene 12435 		ENSMUST00000118949 (Gm12435-001) 48344215-48345230 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000229_0001ENSDARG00000002213ENSDART00000015688ENSDARG00000019008ENSDART00000027545CIL_000229_0002ENSG00000023318ENST00000262455ENSG00000119509ENST00000262456ENST00000262457ENST00000374921ENST00000460636ENST00000466647ENST00000480309ENST00000496467ENSG00000231697ENST00000424456ENSG00000234709ENST00000420996ENSG00000238172ENST00000443417ENSG00000239908ENST00000461926ENSG00000270995ENST00000603444CIL_000229_0003ENSMUSG00000028343ENSMUST00000030028ENSMUST00000132927ENSMUST00000138743ENSMUST00000148947ENSMUSG00000028344ENSMUST00000030029ENSMUST00000129480ENSMUST00000143433ENSMUST00000149555ENSMUST00000151762ENSMUST00000156602ENSMUSG00000028345ENSMUST00000030030ENSMUST00000132911ENSMUST00000138531ENSMUST00000155750ENSMUST00000155905ENSMUST00000164866ENSMUSG00000081953ENSMUST00000118949
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000229_0001ENSDARG00000002213ENSDART00000015688ENSDARG00000019008ENSDART00000027545CIL_000229_0002ENSG00000023318ENST00000262455ENSG00000119509ENST00000262456ENST00000262457ENST00000374921ENSG00000231697ENST00000424456ENSG00000234709ENST00000420996ENSG00000238172ENST00000443417ENSG00000239908ENST00000461926ENSG00000270995ENST00000603444CIL_000229_0003ENSMUSG00000028343ENSMUST00000030028ENSMUST00000138743ENSMUSG00000028344ENSMUST00000030029ENSMUSG00000028345ENSMUST00000030030ENSMUST00000155905ENSMUST00000164866ENSMUSG00000081953ENSMUST00000118949
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002213 ENSDART00000015688 N/A N/A N/A 0.348±0.11 N/A N/A 1.205±0.29 0.238±0.14 0.237±0.00 N/A 0.351±0.00 N/A N/A N/A
ENSDARG00000019008 ENSDART00000027545 N/A N/A N/A 16.619±10.05 N/A N/A 22.598±22.24 16.144±17.35 3.959±0.00 N/A 14.469±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000023318 ENST00000262455 8.423±0.00 8.085±0.00 2.021±0.00 3.697±0.02 5.526±1.42 6.207±2.58 3.075±1.51 7.782±2.98 8.303±5.66 5.019±4.23 3.975±0.00 5.627±2.26 12.898±3.60 7.031±1.68
ENSG00000119509 ENST00000262456 N/A 0.994±0.00 2.286±0.00 0.396±0.00 0.895±0.00 1.859±0.00 N/A N/A 1.412±0.00 1.447±1.18 0.474±0.06 1.281±0.65 0.553±0.20 0.446±0.00
ENST00000262457 2.056±0.00 N/A 0.930±0.00 0.986±0.50 1.582±0.00 1.850±0.48 0.998±0.13 N/A 2.598±0.00 1.493±0.10 0.265±0.11 2.133±1.06 1.512±0.49 2.725±0.79
ENST00000374921 N/A N/A 0.893±0.00 0.443±0.00 2.334±0.00 1.761±0.00 1.155±0.00 2.220±0.00 1.712±0.00 N/A 0.452±0.00 1.607±0.00 N/A N/A
ENST00000460636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000231697 ENST00000424456 0.016±0.00 0.118±0.00 1.085±0.00 0.196±0.13 0.740±0.71 1.172±0.00 0.277±0.25 0.521±0.00 0.797±0.00 0.627±0.00 0.102±0.00 0.471±0.52 0.146±0.00 0.257±0.12
ENSG00000234709 ENST00000420996 N/A 0.478±0.00 0.610±0.00 0.397±0.00 0.207±0.07 0.381±0.27 0.066±0.00 0.382±0.09 0.246±0.18 0.256±0.00 N/A 0.425±0.42 0.675±0.62 0.476±0.38
ENSG00000238172 ENST00000443417 N/A 1.447±0.00 N/A N/A N/A 0.321±0.00 0.047±0.00 0.384±0.21 N/A 0.205±0.00 1.012±0.00 0.042±0.00 0.068±0.00 0.276±0.00
ENSG00000239908 ENST00000461926 N/A 0.438±0.00 N/A 0.743±0.00 0.130±0.00 N/A 0.114±0.00 1.300±1.17 N/A 2.298±0.00 N/A 0.564±0.31 0.160±0.00 0.295±0.18
ENSG00000270995 ENST00000603444 N/A N/A N/A N/A N/A 0.498±0.00 N/A N/A N/A N/A N/A 0.113±0.00 N/A 0.072±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028343 ENSMUST00000030028 8.558±1.87 73.268±8.97 8.684±0.16 9.460±3.94 13.028±3.79 20.698±3.04 5.805±0.81 14.230±2.75 18.892±6.46 14.212±3.21 7.712±0.48 18.177±7.53 26.956±7.63 9.156±3.28
ENSMUST00000132927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138743 N/A N/A N/A 11.370±0.00 N/A N/A N/A N/A N/A N/A N/A 29.771±0.00 74.956±29.07 19.772±0.00
ENSMUST00000148947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028344 ENSMUST00000030029 2.675±0.63 1.768±0.77 2.997±0.01 3.115±0.98 1.802±0.10 1.064±0.37 0.643±0.02 2.068±0.45 1.104±0.32 2.367±0.22 0.451±0.05 3.415±0.73 1.858±0.26 1.120±0.00
ENSMUST00000129480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028345 ENSMUST00000030030 3.170±1.82 0.991±0.00 10.111±1.95 7.863±4.81 5.145±0.00 1.162±0.18 1.399±0.56 1.456±0.25 7.259±1.94 2.662±0.76 3.420±0.46 4.110±1.21 10.234±4.87 11.953±6.24
ENSMUST00000132911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155905 3.297±0.40 N/A N/A 2.799±0.00 2.562±0.74 1.754±0.47 0.718±0.06 2.179±0.00 1.163±0.33 2.512±0.52 0.653±0.00 6.073±2.43 5.677±2.45 7.511±1.68
ENSMUST00000164866 N/A 2.208±0.65 N/A N/A 2.112±0.39 1.103±0.00 N/A N/A 1.178±0.00 N/A N/A 5.485±2.48 N/A N/A
ENSMUSG00000081953 ENSMUST00000118949 0.103±0.04 0.114±0.00 0.116±0.02 9.085±9.00 0.235±0.20 0.237±0.00 0.035±0.00 0.068±0.02 10.339±29.05 0.056±0.01 0.026±0.00 0.150±0.06 0.180±0.09 0.055±0.02

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