C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424559 AC000089.3-001 ENSG00000235776 9606 + 22:19792294-19793094 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000424559
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000424559 0.112±0.00 0.267±0.00 0.027±0.00 0.129±0.00 0.280±0.19 0.044±0.00 0.051±0.00 0.022±0.00 0.049±0.00 0.253±0.00 0.289±0.13 0.484±0.00 0.089±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BW CIL_0008BW_0001 VISTA 22:19453681-20054184
CIL_00099J CIL_00099J_0001 VISTA 22:19461833-20062532
CIL_00095F CIL_00095F_0001 VISTA 22:19497462-20100487
CIL_0003KU CIL_0003KU_0002 CGP 22:19756703-19854939
CIL_0005F1 CIL_0005F1_0001 CGP 22:19783224-19854939

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 785
ENSMUST00000120504 Gm12124-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000119908 Gm9005-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000118582 Gm14082-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000117289 Gm16394-001 processed_pseudogene Mus_musculus 0 363

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