C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cartilage oligomeric matrix protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003659 Comp-201 ENSMUSG00000031849 10090 + 8:70373548-70382065 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003659
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003659 0.432±0.05 0.112±0.03 0.066±0.02 0.156±0.09 0.405±0.15 0.200±0.11 5.576±0.64 0.891±0.39 0.577±0.70 0.224±0.06 2.042±1.30 1.304±0.97 1.498±0.90 50.260±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002020 IPI protease binding
GO:0003417 IGI growth plate cartilage development
GO:0005201 IEA extracellular matrix structural constituent
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005518 IEA collagen binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IEA extracellular space
GO:0006915 IEA apoptotic process
GO:0007155 IEA cell adhesion
GO:0008201 IEA heparin binding
GO:0030198 IEA extracellular matrix organization
GO:0031012 IEA extracellular matrix
GO:0043066 IEA negative regulation of apoptotic process
GO:0043395 IEA heparan sulfate proteoglycan binding
GO:0060173 IEA limb development
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000057305 thbs3a-001 protein_coding Danio_rerio 0 446
ENST00000222271 COMP-001 protein_coding Homo_sapiens 0 2283
ENST00000368378 THBS3-001 protein_coding Homo_sapiens 0 451
ENST00000425807 COMP-005 protein_coding Homo_sapiens 0 1864
ENST00000457183 THBS3-009 protein_coding Homo_sapiens 0 451
ENST00000541576 THBS3-201 protein_coding Homo_sapiens 0 451
ENST00000541990 THBS3-202 protein_coding Homo_sapiens 0 451
ENST00000542601 COMP-007 protein_coding Homo_sapiens 0 2233
ENST00000612179 COMP-008 retained_intron Homo_sapiens 2.8026e-45 185

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