C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425840 RP11-509M23.1-001 ENSG00000214853 9606 - 5:84999920-85000295 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungMuscleTestisENST00000425840
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Muscle Testis
ENST00000425840 0.078±0.00 0.408±0.00 0.043±0.00 0.654±0.00 0.151±0.00 0.041±0.00 0.075±0.00 0.175±0.00 0.037±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TM CIL_0005TM_0002 CGP 5:83940554-86620962

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 414
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 412
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 412
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 401
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 392
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 387
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 366
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000119162 Gm15621-001 processed_pseudogene Mus_musculus 0 294

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