C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: helicase with zinc finger 2, transcriptional coactivator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427522 HELZ2-001 ENSG00000130589 9606 - 20:63558086-63568074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000427522
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000427522 2.014±0.00 0.408±0.29 1.080±0.41 1.106±0.00 1.986±0.00 1.633±0.00 3.771±0.00 0.201±0.05 3.540±3.03 1.409±0.48 0.676±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012G CIL_00012G_0001 CGP 20:63547891-63574239
CIL_00012X CIL_00012X_0001 CGP 20:63558086-63627041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016020 IDA membrane
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108831 Helz2-201 protein_coding Mus_musculus 0 918
ENSMUST00000094203 Helz2-003 protein_coding Mus_musculus 0 918
ENSMUST00000121484 Helz2-001 protein_coding Mus_musculus 0 819
ENSMUST00000149417 Helz2-004 retained_intron Mus_musculus 0 279

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