C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Alstrom syndrome 1 pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428767 ALMS1P-001 ENSG00000163016 9606 + 2:73671030-73685085 transcribed_unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaENST00000428767
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta
ENST00000428767 0.066±0.00 0.071±0.00 0.044±0.00 0.127±0.00 0.033±0.00 0.030±0.01 0.159±0.00 0.098±0.00 0.253±0.00 0.043±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003O2 CIL_0003O2_0001 CGP 2:73640832-73737400

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159498 Alms1-ps1-001 unprocessed_pseudogene Mus_musculus 0 374
ENSMUST00000072018 Alms1-001 protein_coding Mus_musculus 0 374
ENSMUST00000160606 Alms1-ps2-002 processed_transcript Mus_musculus 1e-16 92
ENSMUST00000161983 Alms1-ps2-001 transcribed_unprocessed_pseudogene Mus_musculus 1e-16 92

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