C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Alstrom syndrome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072018 Alms1-001 ENSMUSG00000063810 10090 + 6:85587531-85702753 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072018
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072018 0.588±0.32 0.342±0.09 0.456±0.00 0.618±0.34 0.272±0.11 0.390±0.10 0.142±0.03 0.136±0.05 0.251±0.24 0.526±0.00 0.058±0.02 1.531±1.16 0.447±0.35 3.228±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003EB CIL_0003EB_0002 CGP 6:85511131-85702753
CIL_0000LA CIL_0000LA_0002 CGP 6:85587531-85713205

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005814 IEA centriole
GO:0005929 IEA cilium
GO:0016197 IEA endosomal transport
GO:0051492 IEA regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000423048 ALMS1-003 nonsense_mediated_decay Homo_sapiens 0 1210
ENST00000428767 ALMS1P-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 374
ENST00000450720 ALMS1P-002 processed_transcript Homo_sapiens 0 366
ENST00000484298 ALMS1-002 protein_coding Homo_sapiens 0 2350
ENST00000613296 ALMS1-001 protein_coding Homo_sapiens 0 2350
ENST00000614410 ALMS1-008 protein_coding Homo_sapiens 0 2350
ENST00000620466 ALMS1-004 retained_intron Homo_sapiens 0 2350

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