C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: visual system homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429762 VSX1-003 ENSG00000100987 9606 - 20:25070885-25082131 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverOvaryTestisENST00000429762
Transcript ID Adipose Adrenal Brain Breast Colon Liver Ovary Testis
ENST00000429762 0.021±0.00 0.011±0.00 0.419±0.28 0.022±0.00 0.051±0.00 0.027±0.00 0.099±0.05 0.077±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00023G CIL_00023G_0001 CGP 20:25006230-25082365
CIL_0004MS CIL_0004MS_0002 CGP 20:25070885-25226729

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding
GO:0050896 IEA response to stimulus

Homologs

No Homologs available.

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