C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group AT-hook 1 pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000430198 HMGA1P2-001 ENSG00000248641 9606 + 4:73098822-73099145 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastKidneyMuscleOvaryPlacentaTestisENST00000430198
Transcript ID Adipose Brain Breast Kidney Muscle Ovary Placenta Testis
ENST00000430198 0.133±0.00 0.167±0.00 0.081±0.00 0.079±0.00 0.066±0.00 0.194±0.02 0.193±0.00 0.133±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D1 CIL_0000D1_0001 CGP 4:73056080-73258798

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117254 Hmga1-004 protein_coding Mus_musculus 0 411
ENSMUST00000118599 Hmga1-005 protein_coding Mus_musculus 0 411
ENSMUST00000119486 Hmga1-006 protein_coding Mus_musculus 0 411
ENSMUST00000117600 Hmga1-001 protein_coding Mus_musculus 0 411
ENSMUST00000105046 Hmga1-rs1-001 protein_coding Mus_musculus 0 411
ENSMUST00000118570 Hmga1-003 protein_coding Mus_musculus 0 257
ENSMUST00000114888 Hmga1-002 protein_coding Mus_musculus 0 257

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