C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group AT-hook 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117600 Hmga1-001 ENSMUSG00000046711 10090 + 17:27556620-27563674 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117600
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117600 1.595±0.23 6.271±1.39 17.835±5.25 4.305±0.53 5.304±0.43 3.315±1.50 20.465±17.00 3.880±0.95 4.075±1.21 2.742±0.61 21.426±2.59 7.912±1.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000251 CIL_000251_0002 CGP 17:27422387-27563674

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008134 ISS transcription factor binding
GO:0008285 ISS negative regulation of cell proliferation
GO:0030374 ISS ligand-dependent nuclear receptor transcription coactivator activity
GO:0035985 ISS senescence-associated heterochromatin focus
GO:0035986 ISS senescence-associated heterochromatin focus assembly
GO:0042974 ISS retinoic acid receptor binding
GO:0042975 ISS peroxisome proliferator activated receptor binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046965 ISS retinoid X receptor binding
GO:0090402 ISS oncogene-induced cell senescence
GO:2000774 ISS positive regulation of cellular senescence

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311487 HMGA1-004 protein_coding Homo_sapiens 0 503
ENST00000347617 HMGA1-001 protein_coding Homo_sapiens 0 309
ENST00000374116 HMGA1-201 protein_coding Homo_sapiens 0 309
ENST00000401473 HMGA1-002 protein_coding Homo_sapiens 0 309
ENST00000414130 HMGA1P8-001 processed_pseudogene Homo_sapiens 0 394
ENST00000415560 HMGA1P1-001 processed_pseudogene Homo_sapiens 0 425
ENST00000430198 HMGA1P2-001 processed_pseudogene Homo_sapiens 0 411
ENST00000447654 HMGA1-202 protein_coding Homo_sapiens 0 503
ENST00000478214 HMGA1-003 processed_transcript Homo_sapiens 0 309

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