C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fidgetin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000433017 FIGNL1-003 ENSG00000132436 9606 - 7:50444477-50450390 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLungOvaryPlacentaTestisENST00000433017
Transcript ID Brain Breast Colon Heart Lung Ovary Placenta Testis
ENST00000433017 0.514±0.00 0.487±0.29 1.422±0.00 0.137±0.00 0.512±0.00 2.206±0.00 0.405±0.16 1.179±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XP CIL_0008XP_0001 VISTA 7:49879868-50480692
CIL_0008P3 CIL_0008P3_0001 VISTA 7:49993452-50594868
CIL_0008XT CIL_0008XT_0001 VISTA 7:50018042-50619048
CIL_0007SD CIL_0007SD_0001 VISTA 7:50081734-50682493
CIL_00089U CIL_00089U_0001 VISTA 7:50196544-50798008
CIL_000642 CIL_000642_0001 CGP 7:50304124-50542535
CIL_0008KL CIL_0008KL_0001 VISTA 7:50358274-50958701
CIL_000641 CIL_000641_0001 CGP 7:50444128-50565457

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000287 ISS magnesium ion binding
GO:0001649 ISS osteoblast differentiation
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0009378 IEA four-way junction helicase activity
GO:0010569 IDA regulation of double-strand break repair via homologous recombination
GO:0016787 ISS hydrolase activity
GO:0033687 ISS osteoblast proliferation
GO:0043066 ISS negative regulation of apoptotic process
GO:0046034 ISS ATP metabolic process
GO:0051726 ISS regulation of cell cycle
GO:0070062 IDA extracellular vesicular exosome
GO:0071479 IDA cellular response to ionizing radiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171938 Fignl1-202 protein_coding Mus_musculus 0 1847
ENSMUST00000171080 Fignl1-201 protein_coding Mus_musculus 0 1847
ENSMUST00000109664 Fignl1-002 protein_coding Mus_musculus 0 1847
ENSMUST00000047689 Fignl1-001 protein_coding Mus_musculus 0 1847
ENSMUST00000150714 Fignl1-004 protein_coding Mus_musculus 0 289
ENSMUST00000123815 Fignl1-005 processed_transcript Mus_musculus 0 239

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