C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class I, B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434333 HLA-B-003 ENSG00000234745 9606 - 6:31355507-31357188 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000420 CIL_000420_0001 CGP 6:31268749-31357188

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001916 IEA positive regulation of T cell mediated cytotoxicity
GO:0002474 IEA antigen processing and presentation of peptide antigen via MHC class I
GO:0006955 IEA immune response
GO:0019882 IEA antigen processing and presentation
GO:0042605 IEA peptide antigen binding
GO:0042612 IEA MHC class I protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097335 Gm8909-201 protein_coding Mus_musculus 0 542
ENSMUST00000040467 Gm8909-001 protein_coding Mus_musculus 0 542
ENSMUST00000173353 Gm8909-002 protein_coding Mus_musculus 0 542
ENSMUST00000172785 H2-D1-001 protein_coding Mus_musculus 0 508
ENSMUST00000173075 H2-K1-010 protein_coding Mus_musculus 0 494
ENSMUST00000025181 H2-K1-001 protein_coding Mus_musculus 0 481
ENSMUST00000114311 H2-K1-002 retained_intron Mus_musculus 0 481
ENSMUST00000172912 H2-K1-003 protein_coding Mus_musculus 0 481
ENSMUST00000173080 H2-Bl-201 protein_coding Mus_musculus 0 425
ENSMUST00000184502 H2-Bl-008 protein_coding Mus_musculus 0 355
ENSMUST00000173625 Gm8909-004 processed_transcript Mus_musculus 0 287
ENSMUST00000185087 H2-Bl-005 nonsense_mediated_decay Mus_musculus 9.99995e-41 171
ENSMUST00000172782 H2-K1-007 processed_transcript Mus_musculus 5e-40 169
ENSMUST00000171139 H2-M2-002 protein_coding Mus_musculus 1e-31 141
ENSMUST00000016427 H2-M2-001 protein_coding Mus_musculus 1e-31 141
ENSMUST00000166442 H2-T10-201 protein_coding Mus_musculus 9e-23 111
ENSMUST00000174382 H2-T10-003 polymorphic_pseudogene Mus_musculus 9e-23 111
ENSMUST00000174625 H2-T10-004 retained_intron Mus_musculus 9e-23 111
ENSMUST00000174693 Gm8909-003 processed_transcript Mus_musculus 9e-18 95
ENSMUST00000041398 H2-M10.6-001 protein_coding Mus_musculus 0.00000009 62

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