C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000435634 EXOSC6-001 ENSG00000223496 9606 - 16:70246778-70251930 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000435634
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000435634 7.002±0.00 6.459±0.00 2.443±0.00 12.399±0.65 6.322±0.92 3.223±0.49 3.603±1.03 4.320±1.53 4.268±2.56 3.780±0.38 5.412±3.91 5.842±1.02 4.090±1.37 4.678±0.51

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000178 IDA exosome (RNase complex)
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006364 IEA rRNA processing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding
GO:0045006 IDA DNA deamination
GO:0045190 ISS isotype switching

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034441 Aars-001 protein_coding Mus_musculus 0 911
ENSMUST00000140795 Abat-002 retained_intron Mus_musculus 0.000002 60

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