C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ribosomal protein S9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000436445 RPS9-009 ENSG00000170889 9606 + 19:54200871-54207522 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungOvaryTestisENST00000436445
Transcript ID Brain Lung Ovary Testis
ENST00000436445 26.248±0.00 166.234±0.00 107.203±0.00 57.113±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005M6 CIL_0005M6_0001 CGP 19:54189938-54249003

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0006412 IEA translation
GO:0015935 IEA small ribosomal subunit
GO:0019843 IEA rRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000146927 Rps9-009 nonsense_mediated_decay Mus_musculus 0 760
ENSMUST00000108623 Rps9-002 protein_coding Mus_musculus 0 625
ENSMUST00000126562 Rps9-004 protein_coding Mus_musculus 0 497
ENSMUST00000108625 Rps9-008 protein_coding Mus_musculus 0 497
ENSMUST00000006496 Rps9-001 protein_coding Mus_musculus 0 497
ENSMUST00000136858 Rps9-010 retained_intron Mus_musculus 0 350
ENSMUST00000120147 Gm14034-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000108624 Rps9-003 protein_coding Mus_musculus 1e-36 158

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