C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB, member of RAS oncogene family-like 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000436958 RABL2B-002 ENSG00000079974 9606 - 22:50767530-50783638 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066R CIL_00066R_0001 CGP 22:50738196-50783663

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172053 Rabl2-006 nonsense_mediated_decay Mus_musculus 0 453
ENSMUST00000165747 Rabl2-004 retained_intron Mus_musculus 0 327
ENSMUST00000023294 Rabl2-001 protein_coding Mus_musculus 0 327
ENSMUST00000163376 Rabl2-003 retained_intron Mus_musculus 0 207
ENSMUST00000170126 Rabl2-009 nonsense_mediated_decay Mus_musculus 0 207
ENSMUST00000171826 Rabl2-005 protein_coding Mus_musculus 2e-28 132
ENSMUST00000094056 Rabl2-002 protein_coding Mus_musculus 6e-28 130
ENSMUST00000171580 Rabl2-008 nonsense_mediated_decay Mus_musculus 2e-27 128
ENSMUST00000172074 Rabl2-011 retained_intron Mus_musculus 2e-27 128
ENSMUST00000171142 Rabl2-007 processed_transcript Mus_musculus 8e-27 126
ENSMUST00000169466 Rabl2-010 nonsense_mediated_decay Mus_musculus 8e-27 126

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