C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB, member of RAS oncogene family-like 2B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000079974 RABL2B 9606 - 22:50767501-50783663 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354869 RABL2B-007 50767504-50783621 protein_coding
  ENST00000395590 RABL2B-004 50771210-50783630 protein_coding
  ENST00000395591 RABL2B-003 50767506-50783662 protein_coding
  ENST00000395593 RABL2B-008 50767506-50783642 protein_coding
  ENST00000395595 RABL2B-006 50767506-50783663 protein_coding
  ENST00000395598 RABL2B-001 50767506-50783659 protein_coding
  ENST00000413505 RABL2B-011 50782234-50783045 protein_coding
  ENST00000425098 RABL2B-009 50767506-50782314 nonsense_mediated_decay
  ENST00000435118 RABL2B-201 50767501-50783662 protein_coding
  ENST00000436958 RABL2B-002 50767530-50783638 nonsense_mediated_decay
  ENST00000464678 RABL2B-012 50769782-50783286 retained_intron
  ENST00000464740 RABL2B-015 50777660-50783630 retained_intron
  ENST00000465063 RABL2B-010 50767509-50770502 processed_transcript
  ENST00000468451 RABL2B-014 50775771-50783600 nonsense_mediated_decay
  ENST00000482308 RABL2B-013 50769527-50775833 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354869ENST00000395590ENST00000395591ENST00000395595ENST00000395598ENST00000425098ENST00000464678ENST00000465063
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354869 N/A N/A 0.924±0.00 N/A N/A 0.723±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395590 N/A N/A N/A 1.803±0.00 1.135±0.00 0.686±0.02 0.428±0.00 1.585±0.00 0.696±0.00 1.022±0.26 0.100±0.00 2.012±0.21 1.121±0.00 3.323±1.61
ENST00000395591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.288±0.00 N/A N/A N/A
ENST00000395595 1.456±0.00 3.106±0.00 N/A 3.191±0.93 2.212±0.00 1.606±0.00 0.662±0.00 3.002±0.00 0.371±0.00 2.949±0.00 N/A 2.034±0.70 2.125±0.19 3.751±0.18
ENST00000395598 N/A N/A N/A N/A N/A N/A N/A N/A 1.277±0.00 N/A N/A N/A N/A N/A
ENST00000425098 N/A N/A 0.955±0.00 N/A N/A N/A N/A N/A 0.350±0.00 N/A N/A 1.947±0.00 N/A N/A
ENST00000464678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.433±0.00 N/A N/A N/A
ENST00000465063 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.834±0.00 N/A 1.601±0.00 N/A 2.994±1.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066R CIL_00066R_0001 CGP 22:50738196-50783663

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 TAS:IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006184 TAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063321 rabl2 RAB, member of RAS oncogene family-like 2 protein_coding Danio_rerio
ENSMUSG00000022621 Rabl2 RAB, member RAS oncogene family-like 2 protein_coding Mus_musculus

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